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A community-maintained standard library of population genetic models.
Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, McKenzie P, Messer PW, Noskova E, Ortega-Del Vecchyo D, Racimo F, Struck TJ, Gravel S, Gutenkunst RN, Lohmueller KE, Ralph PL, Schrider DR, Siepel A, Kelleher J, Kern AD. Adrion JR, et al. Among authors: baumdicker f. Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967. Elife. 2020. PMID: 32573438 Free PMC article.
Efficient ancestry and mutation simulation with msprime 1.0.
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschumar WW, Lohse K, Matschiner M, Nelson D, Pope NS, Quinto-Cortés CD, Rodrigues MF, Saunack K, Sellinger T, Thornton K, van Kemenade H, Wohns AW, Wong Y, Gravel S, Kern AD, Koskela J, Ralph PL, Kelleher J. Baumdicker F, et al. Genetics. 2022 Mar 3;220(3):iyab229. doi: 10.1093/genetics/iyab229. Genetics. 2022. PMID: 34897427 Free PMC article.
Inference of recent admixture using genotype data.
Pfaffelhuber P, Sester-Huss E, Baumdicker F, Naue J, Lutz-Bonengel S, Staubach F. Pfaffelhuber P, et al. Among authors: baumdicker f. Forensic Sci Int Genet. 2022 Jan;56:102593. doi: 10.1016/j.fsigen.2021.102593. Epub 2021 Sep 20. Forensic Sci Int Genet. 2022. PMID: 34735936
panX: pan-genome analysis and exploration.
Ding W, Baumdicker F, Neher RA. Ding W, et al. Among authors: baumdicker f. Nucleic Acids Res. 2018 Jan 9;46(1):e5. doi: 10.1093/nar/gkx977. Nucleic Acids Res. 2018. PMID: 29077859 Free PMC article.
13 results