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A community-maintained standard library of population genetic models.
Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, McKenzie P, Messer PW, Noskova E, Ortega-Del Vecchyo D, Racimo F, Struck TJ, Gravel S, Gutenkunst RN, Lohmueller KE, Ralph PL, Schrider DR, Siepel A, Kelleher J, Kern AD. Adrion JR, et al. Among authors: mckenzie p. Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967. Elife. 2020. PMID: 32573438 Free PMC article.
ipcoal: an interactive Python package for simulating and analyzing genealogies and sequences on a species tree or network.
McKenzie PF, Eaton DAR. McKenzie PF, et al. Bioinformatics. 2020 Aug 15;36(14):4193-4196. doi: 10.1093/bioinformatics/btaa486. Bioinformatics. 2020. PMID: 32399564
Complete documentation and interactive notebooks prepared for teaching purposes, including an empirical example, are available at https://ipcoal.readthedocs.io/. CONTACT: p.mckenzie@columbia.edu....
Complete documentation and interactive notebooks prepared for teaching purposes, including an empirical example, are available at https://ip …
Cross-species spill-over potential of the H9N2 bat influenza A virus.
El-Shesheny R, Franks J, Kandeil A, Badra R, Turner J, Seiler P, Marathe BM, Jeevan T, Kercher L, Hu M, Sim YE, Hui KPY, Chan MCW, Thompson AJ, McKenzie P, Govorkova EA, Russell CJ, Vogel P, Paulson JC, Peiris JSM, Webster RG, Ali MA, Kayali G, Webby RJ. El-Shesheny R, et al. Among authors: mckenzie p. Nat Commun. 2024 Apr 25;15(1):3449. doi: 10.1038/s41467-024-47635-4. Nat Commun. 2024. PMID: 38664384 Free PMC article.
Genetic and virological characteristics of a reassortant avian influenza A H6N1 virus isolated from wild birds at a live-bird market in Egypt.
Kutkat O, Gomaa M, Aboulhoda BE, Moatasim Y, El Taweel A, Kamel MN, El Sayes M, Elkhrsawy A, AbdAllah H, Kandeil A, McKenzie PP, Webby RJ, Ali MA, Kayali G, El-Shesheny R. Kutkat O, et al. Among authors: mckenzie pp. Arch Virol. 2024 Apr 9;169(5):95. doi: 10.1007/s00705-024-06022-6. Arch Virol. 2024. PMID: 38594485
Preliminary summary and reclassification of cases from the Pediatric Research of Management in Stevens-Johnson syndrome and Epidermonecrolysis (PROMISE) study: A North American, multisite retrospective cohort.
Martinez-Cabriales S, Coulombe J, Aaron M, Hussain SH, Linggonegoro D, Lara-Corrales I, Barootes H, Brandling-Bennett H, Covelli I, Kirkorian AY, Shah N, Castelo-Soccio L, McKenzie P, Arkin LM, Heinze A, Liy-Wong C, Travis N, Rieder M, Del Pozzo-Magana BR, Schoch JJ, Monir R, Glick SA, Uwakwe L, Skillman S, Hekman DP, Lethebe BC, Ramien ML. Martinez-Cabriales S, et al. Among authors: mckenzie p. J Am Acad Dermatol. 2024 Mar;90(3):635-637. doi: 10.1016/j.jaad.2023.08.112. Epub 2023 Nov 4. J Am Acad Dermatol. 2024. PMID: 37926378 No abstract available.
Community-based models of care facilitating the recovery of people living with persistent and complex mental health needs: a systematic review and narrative synthesis.
Harvey C, Zirnsak TM, Brasier C, Ennals P, Fletcher J, Hamilton B, Killaspy H, McKenzie P, Kennedy H, Brophy L. Harvey C, et al. Among authors: mckenzie p. Front Psychiatry. 2023 Sep 14;14:1259944. doi: 10.3389/fpsyt.2023.1259944. eCollection 2023. Front Psychiatry. 2023. PMID: 37779607 Free PMC article.
We are underestimating, again, the true burden of H5N1 in humans.
Gomaa M, Moatasim Y, El Taweel A, Mahmoud SH, El Rifay AS, Kandeil A, McKenzie PP, Webby RJ, El-Shesheny R, Ali MA, Kayali G. Gomaa M, et al. Among authors: mckenzie pp. BMJ Glob Health. 2023 Aug;8(8):e013146. doi: 10.1136/bmjgh-2023-013146. BMJ Glob Health. 2023. PMID: 37643809 Free PMC article. No abstract available.
Emergence of a new genotype of clade 2.3.4.4b H5N1 highly pathogenic avian influenza A viruses in Bangladesh.
Barman S, Turner JCM, Kamrul Hasan M, Akhtar S, Jeevan T, Franks J, Walker D, Mukherjee N, Seiler P, Kercher L, McKenzie P, Webster RG, Feeroz MM, Webby RJ. Barman S, et al. Among authors: mckenzie p. Emerg Microbes Infect. 2023 Dec;12(2):e2252510. doi: 10.1080/22221751.2023.2252510. Epub 2023 Aug 25. Emerg Microbes Infect. 2023. PMID: 37622753 Free PMC article.
213 results