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In situ genome sequencing resolves DNA sequence and structure in intact biological samples.
Science. 2021 Feb 26;371(6532):eaay3446. doi: 10.1126/science.aay3446. Epub 2020 Dec 31.
Science. 2021.
PMID: 33384301
Free PMC article.
Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma.
LaFave LM, Kartha VK, Ma S, Meli K, Del Priore I, Lareau C, Naranjo S, Westcott PMK, Duarte FM, Sankar V, Chiang Z, Brack A, Law T, Hauck H, Okimoto A, Regev A, Buenrostro JD, Jacks T.
LaFave LM, et al.
Cancer Cell. 2020 Aug 10;38(2):212-228.e13. doi: 10.1016/j.ccell.2020.06.006. Epub 2020 Jul 23.
Cancer Cell. 2020.
PMID: 32707078
Free PMC article.
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Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling.
Lareau CA, Ludwig LS, Muus C, Gohil SH, Zhao T, Chiang Z, Pelka K, Verboon JM, Luo W, Christian E, Rosebrock D, Getz G, Boland GM, Chen F, Buenrostro JD, Hacohen N, Wu CJ, Aryee MJ, Regev A, Sankaran VG.
Lareau CA, et al.
Nat Biotechnol. 2021 Apr;39(4):451-461. doi: 10.1038/s41587-020-0645-6. Epub 2020 Aug 12.
Nat Biotechnol. 2021.
PMID: 32788668
Free PMC article.
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Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin.
Ma S, Zhang B, LaFave LM, Earl AS, Chiang Z, Hu Y, Ding J, Brack A, Kartha VK, Tay T, Law T, Lareau C, Hsu YC, Regev A, Buenrostro JD.
Ma S, et al.
Cell. 2020 Nov 12;183(4):1103-1116.e20. doi: 10.1016/j.cell.2020.09.056. Epub 2020 Oct 23.
Cell. 2020.
PMID: 33098772
Free PMC article.
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Deep learning-based enhancement of epigenomics data with AtacWorks.
Lal A, Chiang ZD, Yakovenko N, Duarte FM, Israeli J, Buenrostro JD.
Lal A, et al. Among authors: chiang zd.
Nat Commun. 2021 Mar 8;12(1):1507. doi: 10.1038/s41467-021-21765-5.
Nat Commun. 2021.
PMID: 33686069
Free PMC article.
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Spatial genomics enables multi-modal study of clonal heterogeneity in tissues.
Zhao T, Chiang ZD, Morriss JW, LaFave LM, Murray EM, Del Priore I, Meli K, Lareau CA, Nadaf NM, Li J, Earl AS, Macosko EZ, Jacks T, Buenrostro JD, Chen F.
Zhao T, et al. Among authors: chiang zd.
Nature. 2022 Jan;601(7891):85-91. doi: 10.1038/s41586-021-04217-4. Epub 2021 Dec 15.
Nature. 2022.
PMID: 34912115
Free PMC article.
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Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling.
Lareau CA, Ludwig LS, Muus C, Gohil SH, Zhao T, Chiang Z, Pelka K, Verboon JM, Luo W, Christian E, Rosebrock D, Getz G, Boland GM, Chen F, Buenrostro JD, Hacohen N, Wu CJ, Aryee MJ, Regev A, Sankaran VG.
Lareau CA, et al.
Nat Biotechnol. 2023 Sep;41(9):1345. doi: 10.1038/s41587-023-01942-1.
Nat Biotechnol. 2023.
PMID: 37653227
No abstract available.
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A compendium of promoter-centered long-range chromatin interactions in the human genome.
Jung I, Schmitt A, Diao Y, Lee AJ, Liu T, Yang D, Tan C, Eom J, Chan M, Chee S, Chiang Z, Kim C, Masliah E, Barr CL, Li B, Kuan S, Kim D, Ren B.
Jung I, et al.
Nat Genet. 2019 Oct;51(10):1442-1449. doi: 10.1038/s41588-019-0494-8. Epub 2019 Sep 9.
Nat Genet. 2019.
PMID: 31501517
Free PMC article.
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