Filer DL - Search Results

1

Noninvasive prenatal exome sequencing diagnostic utility limited by sequencing depth and fetal fraction.

Filer DL, Mieczkowski PA, Brandt A, Gilmore KL, Powell BC, Berg JS, Wilhelmsen KC, Vora NL. Filer DL, et al. Prenat Diagn. 2022 May;42(5):567-573. doi: 10.1002/pd.6009. Epub 2021 Jul 21. Prenat Diagn. 2022. PMID: 34265090 Free PMC article.

2

Pre-capture multiplexing provides additional power to detect copy number variation in exome sequencing.

Filer DL, Kuo F, Brandt AT, Tilley CR, Mieczkowski PA, Berg JS, Robasky K, Li Y, Bizon C, Tilson JL, Powell BC, Bost DM, Jeffries CD, Wilhelmsen KC. Filer DL, et al. BMC Bioinformatics. 2021 Jul 20;22(1):374. doi: 10.1186/s12859-021-04246-w. BMC Bioinformatics. 2021. PMID: 34284719 Free PMC article.

3

A greedy regression algorithm with coarse weights offers novel advantages.

Jeffries CD, Ford JR, Tilson JL, Perkins DO, Bost DM, Filer DL, Wilhelmsen KC. Jeffries CD, et al. Among authors: filer dl. Sci Rep. 2022 Mar 31;12(1):5440. doi: 10.1038/s41598-022-09415-2. Sci Rep. 2022. PMID: 35361850 Free PMC article.

4

Projected t-SNE for batch correction.

Aliverti E, Tilson JL, Filer DL, Babcock B, Colaneri A, Ocasio J, Gershon TR, Wilhelmsen KC, Dunson DB. Aliverti E, et al. Among authors: filer dl. Bioinformatics. 2020 Jun 1;36(11):3522-3527. doi: 10.1093/bioinformatics/btaa189. Bioinformatics. 2020. PMID: 32176244 Free PMC article.

5

Falciparum malaria from coastal Tanzania and Zanzibar remains highly connected despite effective control efforts on the archipelago.

Morgan AP, Brazeau NF, Ngasala B, Mhamilawa LE, Denton M, Msellem M, Morris U, Filer DL, Aydemir O, Bailey JA, Parr JB, Mårtensson A, Bjorkman A, Juliano JJ. Morgan AP, et al. Among authors: filer dl. Malar J. 2020 Jan 28;19(1):47. doi: 10.1186/s12936-020-3137-8. Malar J. 2020. PMID: 31992305 Free PMC article.

6

On the Utility of ToxCast-Based Predictive Models to Evaluate Potential Metabolic Disruption by Environmental Chemicals.

Filer DL, Hoffman K, Sargis RM, Trasande L, Kassotis CD. Filer DL, et al. Environ Health Perspect. 2022 May;130(5):57005. doi: 10.1289/EHP6779. Epub 2022 May 9. Environ Health Perspect. 2022. PMID: 35533074 Free PMC article. Review.

7

tcpl: the ToxCast pipeline for high-throughput screening data.

Filer DL, Kothiya P, Setzer RW, Judson RS, Martin MT. Filer DL, et al. Bioinformatics. 2017 Feb 15;33(4):618-620. doi: 10.1093/bioinformatics/btw680. Bioinformatics. 2017. PMID: 27797781

8

Predictive endocrine testing in the 21st century using in vitro assays of estrogen receptor signaling responses.

Rotroff DM, Martin MT, Dix DJ, Filer DL, Houck KA, Knudsen TB, Sipes NS, Reif DM, Xia M, Huang R, Judson RS. Rotroff DM, et al. Among authors: filer dl. Environ Sci Technol. 2014;48(15):8706-16. doi: 10.1021/es502676e. Epub 2014 Jul 10. Environ Sci Technol. 2014. PMID: 24960280

9

Integrated Model of Chemical Perturbations of a Biological Pathway Using 18 In Vitro High-Throughput Screening Assays for the Estrogen Receptor.

Judson RS, Magpantay FM, Chickarmane V, Haskell C, Tania N, Taylor J, Xia M, Huang R, Rotroff DM, Filer DL, Houck KA, Martin MT, Sipes N, Richard AM, Mansouri K, Setzer RW, Knudsen TB, Crofton KM, Thomas RS. Judson RS, et al. Among authors: filer dl. Toxicol Sci. 2015 Nov;148(1):137-54. doi: 10.1093/toxsci/kfv168. Epub 2015 Aug 13. Toxicol Sci. 2015. PMID: 26272952 Free PMC article.

10

Evaluation of food-relevant chemicals in the ToxCast high-throughput screening program.

Karmaus AL, Filer DL, Martin MT, Houck KA. Karmaus AL, et al. Among authors: filer dl. Food Chem Toxicol. 2016 Jun;92:188-96. doi: 10.1016/j.fct.2016.04.012. Epub 2016 Apr 19. Food Chem Toxicol. 2016. PMID: 27103583 Free article.

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