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DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.
Nat Commun. 2021 Dec 3;12(1):7068. doi: 10.1038/s41467-021-27396-0.
Nat Commun. 2021.
PMID: 34862392
Free PMC article.
PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes.
Marzella DF, Parizi FM, van Tilborg D, Renaud N, Sybrandi D, Buzatu R, Rademaker DT, 't Hoen PAC, Xue LC.
Marzella DF, et al.
Front Immunol. 2022 May 10;13:878762. doi: 10.3389/fimmu.2022.878762. eCollection 2022.
Front Immunol. 2022.
PMID: 35619705
Free PMC article.
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The PANDORA Software for Anchor-Restrained Peptide:MHC Modeling.
Marzella DF, Crocioni G, Parizi FM, Xue LC.
Marzella DF, et al.
Methods Mol Biol. 2023;2673:251-271. doi: 10.1007/978-1-0716-3239-0_18.
Methods Mol Biol. 2023.
PMID: 37258920
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PANDORA v2.0: Benchmarking peptide-MHC II models and software improvements.
Parizi FM, Marzella DF, Ramakrishnan G, 't Hoen PAC, Karimi-Jafari MH, Xue LC.
Parizi FM, et al. Among authors: marzella df.
Front Immunol. 2023 Dec 8;14:1285899. doi: 10.3389/fimmu.2023.1285899. eCollection 2023.
Front Immunol. 2023.
PMID: 38143769
Free PMC article.
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