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Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations.
Gangavarapu K, Latif AA, Mullen JL, Alkuzweny M, Hufbauer E, Tsueng G, Haag E, Zeller M, Aceves CM, Zaiets K, Cano M, Zhou X, Qian Z, Sattler R, Matteson NL, Levy JI, Lee RTC, Freitas L, Maurer-Stroh S; GISAID Core and Curation Team; Suchard MA, Wu C, Su AI, Andersen KG, Hughes LD. Gangavarapu K, et al. Among authors: tsueng g. Nat Methods. 2023 Apr;20(4):512-522. doi: 10.1038/s41592-023-01769-3. Epub 2023 Feb 23. Nat Methods. 2023. PMID: 36823332 Free PMC article.
Addressing barriers in FAIR data practices for biomedical data.
Hughes LD, Tsueng G, DiGiovanna J, Horvath TD, Rasmussen LV, Savidge TC, Stoeger T, Turkarslan S, Wu Q, Wu C, Su AI, Pache L; NIAID Systems Biology Data Dissemination Working Group. Hughes LD, et al. Among authors: tsueng g. Sci Data. 2023 Feb 23;10(1):98. doi: 10.1038/s41597-023-01969-8. Sci Data. 2023. PMID: 36823198 Free PMC article. No abstract available.
Developing a standardized but extendable framework to increase the findability of infectious disease datasets.
Tsueng G, Cano MAA, Bento J, Czech C, Kang M, Pache L, Rasmussen LV, Savidge TC, Starren J, Wu Q, Xin J, Yeaman MR, Zhou X, Su AI, Wu C, Brown L, Shabman RS, Hughes LD; NIAID Systems Biology Data Dissemination Working Group. Tsueng G, et al. Sci Data. 2023 Feb 23;10(1):99. doi: 10.1038/s41597-023-01968-9. Sci Data. 2023. PMID: 36823157 Free PMC article.
Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations.
Gangavarapu K, Latif AA, Mullen JL, Alkuzweny M, Hufbauer E, Tsueng G, Haag E, Zeller M, Aceves CM, Zaiets K, Cano M, Zhou J, Qian Z, Sattler R, Matteson NL, Levy JI, Lee RT, Freitas L, Maurer-Stroh S; GISAID core and curation team; Suchard MA, Wu C, Su AI, Andersen KG, Hughes LD. Gangavarapu K, et al. Among authors: tsueng g. Res Sq [Preprint]. 2022 Jun 28:rs.3.rs-1723829. doi: 10.21203/rs.3.rs-1723829/v1. Res Sq. 2022. Update in: Nat Methods. 2023 Apr;20(4):512-522. doi: 10.1038/s41592-023-01769-3. PMID: 35794893 Free PMC article. Updated. Preprint.
Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data.
Cano M, Tsueng G, Zhou X, Hughes LD, Mullen JL, Xin J, Su AI, Wu C. Cano M, et al. Among authors: tsueng g. bioRxiv [Preprint]. 2022 Jun 2:2021.09.02.458726. doi: 10.1101/2021.09.02.458726. bioRxiv. 2022. Update in: BMC Bioinformatics. 2023 Apr 20;24(1):159. doi: 10.1186/s12859-023-05258-4. PMID: 35677074 Free PMC article. Updated. Preprint.
Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources.
Tsueng G, Mullen JL, Alkuzweny M, Cano M, Rush B, Haag E, Curators O, Lin J, Welzel DJ, Zhou X, Qian Z, Latif AA, Hufbauer E, Zeller M, Andersen KG, Wu C, Su AI, Gangavarapu K, Hughes LD. Tsueng G, et al. bioRxiv [Preprint]. 2022 Dec 7:2022.01.20.477133. doi: 10.1101/2022.01.20.477133. bioRxiv. 2022. Update in: Nat Methods. 2023 Apr;20(4):536-540. doi: 10.1038/s41592-023-01770-w. PMID: 35132411 Free PMC article. Updated. Preprint.
34 results