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dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.
Nat Commun. 2022 Jul 8;13(1):3944. doi: 10.1038/s41467-022-31492-0.
Nat Commun. 2022.
PMID: 35803928
Free PMC article.
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition.
Meier F, Brunner AD, Frank M, Ha A, Bludau I, Voytik E, Kaspar-Schoenefeld S, Lubeck M, Raether O, Bache N, Aebersold R, Collins BC, Röst HL, Mann M.
Meier F, et al. Among authors: kaspar schoenefeld s.
Nat Methods. 2020 Dec;17(12):1229-1236. doi: 10.1038/s41592-020-00998-0. Epub 2020 Nov 30.
Nat Methods. 2020.
PMID: 33257825
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MaxDIA enables library-based and library-free data-independent acquisition proteomics.
Sinitcyn P, Hamzeiy H, Salinas Soto F, Itzhak D, McCarthy F, Wichmann C, Steger M, Ohmayer U, Distler U, Kaspar-Schoenefeld S, Prianichnikov N, Yılmaz Ş, Rudolph JD, Tenzer S, Perez-Riverol Y, Nagaraj N, Humphrey SJ, Cox J.
Sinitcyn P, et al. Among authors: kaspar schoenefeld s.
Nat Biotechnol. 2021 Dec;39(12):1563-1573. doi: 10.1038/s41587-021-00968-7. Epub 2021 Jul 8.
Nat Biotechnol. 2021.
PMID: 34239088
Free PMC article.
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Label-free proteome profiling reveals developmental-dependent patterns in young barley grains.
Kaspar-Schoenefeld S, Merx K, Jozefowicz AM, Hartmann A, Seiffert U, Weschke W, Matros A, Mock HP.
Kaspar-Schoenefeld S, et al.
J Proteomics. 2016 Jun 30;143:106-121. doi: 10.1016/j.jprot.2016.04.007. Epub 2016 Apr 14.
J Proteomics. 2016.
PMID: 27102496
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Plasma membrane proteome analysis identifies a role of barley membrane steroid binding protein in root architecture response to salinity.
Witzel K, Matros A, Møller ALB, Ramireddy E, Finnie C, Peukert M, Rutten T, Herzog A, Kunze G, Melzer M, Kaspar-Schoenefeld S, Schmülling T, Svensson B, Mock HP.
Witzel K, et al. Among authors: kaspar schoenefeld s.
Plant Cell Environ. 2018 Jun;41(6):1311-1330. doi: 10.1111/pce.13154. Epub 2018 Mar 15.
Plant Cell Environ. 2018.
PMID: 29385242
Free article.
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