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Specialization of the photoreceptor transcriptome by Srrm3-dependent microexons is required for outer segment maintenance and vision.
Ciampi L, Mantica F, López-Blanch L, Permanyer J, Rodriguez-Marín C, Zang J, Cianferoni D, Jiménez-Delgado S, Bonnal S, Miravet-Verde S, Ruprecht V, Neuhauss SCF, Banfi S, Carrella S, Serrano L, Head SA, Irimia M. Ciampi L, et al. Among authors: permanyer j. Proc Natl Acad Sci U S A. 2022 Jul 19;119(29):e2117090119. doi: 10.1073/pnas.2117090119. Epub 2022 Jul 12. Proc Natl Acad Sci U S A. 2022. PMID: 35858306 Free PMC article.
Evolutionary genomics of the recently duplicated amphioxus Hairy genes.
Jiménez-Delgado S, Crespo M, Permanyer J, Garcia-Fernàndez J, Manzanares M. Jiménez-Delgado S, et al. Among authors: permanyer j. Int J Biol Sci. 2006;2(2):66-72. doi: 10.7150/ijbs.2.66. Epub 2006 Apr 10. Int J Biol Sci. 2006. PMID: 16733536 Free PMC article.
An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms.
Tapial J, Ha KCH, Sterne-Weiler T, Gohr A, Braunschweig U, Hermoso-Pulido A, Quesnel-Vallières M, Permanyer J, Sodaei R, Marquez Y, Cozzuto L, Wang X, Gómez-Velázquez M, Rayon T, Manzanares M, Ponomarenko J, Blencowe BJ, Irimia M. Tapial J, et al. Among authors: permanyer j. Genome Res. 2017 Oct;27(10):1759-1768. doi: 10.1101/gr.220962.117. Epub 2017 Aug 30. Genome Res. 2017. PMID: 28855263 Free PMC article.
Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes.
Burguera D, Marquez Y, Racioppi C, Permanyer J, Torres-Méndez A, Esposito R, Albuixech-Crespo B, Fanlo L, D'Agostino Y, Gohr A, Navas-Perez E, Riesgo A, Cuomo C, Benvenuto G, Christiaen LA, Martí E, D'Aniello S, Spagnuolo A, Ristoratore F, Arnone MI, Garcia-Fernàndez J, Irimia M. Burguera D, et al. Among authors: permanyer j. Nat Commun. 2017 Nov 27;8(1):1799. doi: 10.1038/s41467-017-01961-y. Nat Commun. 2017. PMID: 29180615 Free PMC article.
A novel protein domain in an ancestral splicing factor drove the evolution of neural microexons.
Torres-Méndez A, Bonnal S, Marquez Y, Roth J, Iglesias M, Permanyer J, Almudí I, O'Hanlon D, Guitart T, Soller M, Gingras AC, Gebauer F, Rentzsch F, Blencowe BJ, Valcárcel J, Irimia M. Torres-Méndez A, et al. Among authors: permanyer j. Nat Ecol Evol. 2019 Apr;3(4):691-701. doi: 10.1038/s41559-019-0813-6. Epub 2019 Mar 4. Nat Ecol Evol. 2019. PMID: 30833759
Autism-Misregulated eIF4G Microexons Control Synaptic Translation and Higher Order Cognitive Functions.
Gonatopoulos-Pournatzis T, Niibori R, Salter EW, Weatheritt RJ, Tsang B, Farhangmehr S, Liang X, Braunschweig U, Roth J, Zhang S, Henderson T, Sharma E, Quesnel-Vallières M, Permanyer J, Maier S, Georgiou J, Irimia M, Sonenberg N, Forman-Kay JD, Gingras AC, Collingridge GL, Woodin MA, Cordes SP, Blencowe BJ. Gonatopoulos-Pournatzis T, et al. Among authors: permanyer j. Mol Cell. 2020 Mar 19;77(6):1176-1192.e16. doi: 10.1016/j.molcel.2020.01.006. Epub 2020 Jan 29. Mol Cell. 2020. PMID: 31999954 Free article.
The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians.
Spruce T, Plass M, Gohr A, Ray D, Martínez de Lagrán M, Rot G, Nóvoa A, Burguera D, Permanyer J, Miret M, Zheng H, Swanson MS, Morris Q, Mallo M, Dierssen M, Hughes TR, Pernaute B, Irimia M. Spruce T, et al. Among authors: permanyer j. PLoS Biol. 2022 Apr 27;20(4):e3001615. doi: 10.1371/journal.pbio.3001615. eCollection 2022 Apr. PLoS Biol. 2022. PMID: 35476669 Free PMC article.
34 results