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Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.
Rasskazov D, Chadaeva I, Sharypova E, Zolotareva K, Khandaev B, Ponomarenko P, Podkolodnyy N, Tverdokhleb N, Vishnevsky O, Bogomolov A, Podkolodnaya O, Savinkova L, Zemlyanskaya E, Golubyatnikov V, Kolchanov N, Ponomarenko M. Rasskazov D, et al. Among authors: podkolodnyy n. Int J Mol Sci. 2022 Aug 4;23(15):8684. doi: 10.3390/ijms23158684. Int J Mol Sci. 2022. PMID: 35955817 Free PMC article.
Mechanical Behavior of Cells within a Cell-Based Model of Wheat Leaf Growth.
Zubairova U, Nikolaev S, Penenko A, Podkolodnyy N, Golushko S, Afonnikov D, Kolchanov N. Zubairova U, et al. Among authors: podkolodnyy n. Front Plant Sci. 2016 Dec 15;7:1878. doi: 10.3389/fpls.2016.01878. eCollection 2016. Front Plant Sci. 2016. PMID: 28018409 Free PMC article.
Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection.
Bogomolov A, Filonov S, Chadaeva I, Rasskazov D, Khandaev B, Zolotareva K, Kazachek A, Oshchepkov D, Ivanisenko VA, Demenkov P, Podkolodnyy N, Kondratyuk E, Ponomarenko P, Podkolodnaya O, Mustafin Z, Savinkova L, Kolchanov N, Tverdokhleb N, Ponomarenko M. Bogomolov A, et al. Among authors: podkolodnyy n. Int J Mol Sci. 2023 May 19;24(10):9010. doi: 10.3390/ijms24109010. Int J Mol Sci. 2023. PMID: 37240358 Free PMC article.
Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases.
Filonov SV, Podkolodnyy NL, Podkolodnaya OA, Tverdokhleb NN, Ponomarenko PM, Rasskazov DA, Bogomolov AG, Ponomarenko MP. Filonov SV, et al. Among authors: podkolodnyy nl. Vavilovskii Zhurnal Genet Selektsii. 2023 Dec;27(7):728-736. doi: 10.18699/VJGB-23-85. Vavilovskii Zhurnal Genet Selektsii. 2023. PMID: 38213714 Free PMC article.
RatDEGdb: a knowledge base of differentially expressed genes in the rat as a model object in biomedical research.
Chadaeva IV, Filonov SV, Zolotareva KA, Khandaev BM, Ershov NI, Podkolodnyy NL, Kozhemyakina RV, Rasskazov DA, Bogomolov AG, Kondratyuk EY, Klimova NV, Shikhevich SG, Ryazanova MA, Fedoseeva LA, Redina ОЕ, Kozhevnikova OS, Stefanova NA, Kolosova NG, Markel AL, Ponomarenko MP, Oshchepkov DY. Chadaeva IV, et al. Among authors: podkolodnyy nl. Vavilovskii Zhurnal Genet Selektsii. 2023 Dec;27(7):794-806. doi: 10.18699/VJGB-23-92. Vavilovskii Zhurnal Genet Selektsii. 2023. PMID: 38213701 Free PMC article.
AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.
Bogomolov A, Zolotareva K, Filonov S, Chadaeva I, Rasskazov D, Sharypova E, Podkolodnyy N, Ponomarenko P, Savinkova L, Tverdokhleb N, Khandaev B, Kondratyuk E, Podkolodnaya O, Zemlyanskaya E, Kolchanov NA, Ponomarenko M. Bogomolov A, et al. Among authors: podkolodnyy n. Int J Mol Sci. 2024 Jan 3;25(1):607. doi: 10.3390/ijms25010607. Int J Mol Sci. 2024. PMID: 38203780 Free PMC article.