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Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics.
Aparo A, Bonnici V, Micale G, Ferro A, Shasha D, Pulvirenti A, Giugno R. Aparo A, et al. Among authors: giugno r. Interdiscip Sci. 2019 Mar;11(1):21-32. doi: 10.1007/s12539-019-00323-0. Epub 2019 Feb 21. Interdiscip Sci. 2019. PMID: 30790228
Construction and Analysis of miRNA Regulatory Networks.
Mensi A, Bonnici V, Caligola S, Giugno R. Mensi A, et al. Among authors: giugno r. Methods Mol Biol. 2019;1970:121-167. doi: 10.1007/978-1-4939-9207-2_9. Methods Mol Biol. 2019. PMID: 30963492
cuRnet: an R package for graph traversing on GPU.
Bonnici V, Busato F, Aldegheri S, Akhmedov M, Cascione L, Carmena AA, Bertoni F, Bombieri N, Kwee I, Giugno R. Bonnici V, et al. Among authors: giugno r. BMC Bioinformatics. 2018 Oct 15;19(Suppl 10):356. doi: 10.1186/s12859-018-2310-3. BMC Bioinformatics. 2018. PMID: 30367572 Free PMC article.
Ten quick tips for biomarker discovery and validation analyses using machine learning.
Diaz-Uriarte R, Gómez de Lope E, Giugno R, Fröhlich H, Nazarov PV, Nepomuceno-Chamorro IA, Rauschenberger A, Glaab E. Diaz-Uriarte R, et al. Among authors: giugno r. PLoS Comput Biol. 2022 Aug 11;18(8):e1010357. doi: 10.1371/journal.pcbi.1010357. eCollection 2022 Aug. PLoS Comput Biol. 2022. PMID: 35951526 Free PMC article. No abstract available.
INBIA: a boosting methodology for proteomic network inference.
Sardina DS, Micale G, Ferro A, Pulvirenti A, Giugno R. Sardina DS, et al. Among authors: giugno r. BMC Bioinformatics. 2018 Jul 9;19(Suppl 7):188. doi: 10.1186/s12859-018-2183-5. BMC Bioinformatics. 2018. PMID: 30066650 Free PMC article.
Challenges in gene-oriented approaches for pangenome content discovery.
Bonnici V, Maresi E, Giugno R. Bonnici V, et al. Among authors: giugno r. Brief Bioinform. 2021 May 20;22(3):bbaa198. doi: 10.1093/bib/bbaa198. Brief Bioinform. 2021. PMID: 32893299 Review.
The benchmarks used to compare the pangenomic tools, in addition to the computational pipeline developed for this purpose, are available at https://github.com/InfOmics/pangenes-review. Contact: V. Bonnici, R. Giugno Supplementary information: Supplementary data are …
The benchmarks used to compare the pangenomic tools, in addition to the computational pipeline developed for this purpose, are available at …
101 results