Rubenstein BM - Search Results

1

Defining the HIV Capsid Binding Site of Nucleoporin 153.

Li S, Patel JS, Yang J, Crabtree AM, Rubenstein BM, Lund-Andersen PK, Ytreberg FM, Rowley PA. Li S, et al. Among authors: rubenstein bm. mSphere. 2022 Oct 26;7(5):e0031022. doi: 10.1128/msphere.00310-22. Epub 2022 Aug 30. mSphere. 2022. PMID: 36040047 Free PMC article.

2

Self-Consistent Convolutional Density Functional Approximations: Application to Adsorption at Metal Surfaces.

Sahoo SJ, Xu Q, Lei X, Staros D, Iyer GR, Rubenstein B, Suryanarayana P, Medford AJ. Sahoo SJ, et al. Chemphyschem. 2024 May 17;25(10):e202300688. doi: 10.1002/cphc.202300688. Epub 2024 May 6. Chemphyschem. 2024. PMID: 38421371

3

Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness.

Yang J, Naik N, Patel JS, Wylie CS, Gu W, Huang J, Ytreberg FM, Naik MT, Weinreich DM, Rubenstein BM. Yang J, et al. Among authors: rubenstein bm. PLoS One. 2020 May 29;15(5):e0233509. doi: 10.1371/journal.pone.0233509. eCollection 2020. PLoS One. 2020. PMID: 32470971 Free PMC article.

4

LYRUS: a machine learning model for predicting the pathogenicity of missense variants.

Lai J, Yang J, Gamsiz Uzun ED, Rubenstein BM, Sarkar IN. Lai J, et al. Among authors: rubenstein bm. Bioinform Adv. 2021 Dec 25;2(1):vbab045. doi: 10.1093/bioadv/vbab045. eCollection 2022. Bioinform Adv. 2021. PMID: 35036922 Free PMC article.

5

Covalent docking and molecular dynamics simulations reveal the specificity-shifting mutations Ala237Arg and Ala237Lys in TEM beta-lactamase.

Silva GMD, Yang J, Leang B, Huang J, Weinreich DM, Rubenstein BM. Silva GMD, et al. Among authors: rubenstein bm. PLoS Comput Biol. 2022 Jun 27;18(6):e1009944. doi: 10.1371/journal.pcbi.1009944. eCollection 2022 Jun. PLoS Comput Biol. 2022. PMID: 35759512 Free PMC article.

6

A topological data analytic approach for discovering biophysical signatures in protein dynamics.

Tang WS, da Silva GM, Kirveslahti H, Skeens E, Feng B, Sudijono T, Yang KK, Mukherjee S, Rubenstein B, Crawford L. Tang WS, et al. PLoS Comput Biol. 2022 May 2;18(5):e1010045. doi: 10.1371/journal.pcbi.1010045. eCollection 2022 May. PLoS Comput Biol. 2022. PMID: 35500014 Free PMC article.

7

Finite-Size Error Cancellation in Diffusion Monte Carlo Calculations of Surface Chemistry.

Iyer GR, Rubenstein BM. Iyer GR, et al. Among authors: rubenstein bm. J Phys Chem A. 2022 Jul 21;126(28):4636-4646. doi: 10.1021/acs.jpca.2c01957. Epub 2022 Jul 12. J Phys Chem A. 2022. PMID: 35820033

8

Real-time dynamics of strongly correlated fermions using auxiliary field quantum Monte Carlo.

Church MS, Rubenstein BM. Church MS, et al. Among authors: rubenstein bm. J Chem Phys. 2021 May 14;154(18):184103. doi: 10.1063/5.0049116. J Chem Phys. 2021. PMID: 34241020

9

Machine Learning Diffusion Monte Carlo Forces.

Huang C, Rubenstein BM. Huang C, et al. Among authors: rubenstein bm. J Phys Chem A. 2023 Jan 12;127(1):339-355. doi: 10.1021/acs.jpca.2c05904. Epub 2022 Dec 28. J Phys Chem A. 2023. PMID: 36576803

10

Encoding information in synthetic metabolomes.

Kennedy E, Arcadia CE, Geiser J, Weber PM, Rose C, Rubenstein BM, Rosenstein JK. Kennedy E, et al. Among authors: rubenstein bm. PLoS One. 2019 Jul 3;14(7):e0217364. doi: 10.1371/journal.pone.0217364. eCollection 2019. PLoS One. 2019. PMID: 31269053 Free PMC article.

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