Theis FJ - Search Results

1

CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data.

Lubatti G, Stock M, Iturbide A, Ruiz Tejada Segura ML, Riepl M, Tyser RCV, Danese A, Colomé-Tatché M, Theis FJ, Srinivas S, Torres-Padilla ME, Scialdone A. Lubatti G, et al. Among authors: theis fj. Development. 2023 Jun 1;150(11):dev201264. doi: 10.1242/dev.201264. Epub 2023 Jun 8. Development. 2023. PMID: 37294170

2

miR-335 promotes mesendodermal lineage segregation and shapes a transcription factor gradient in the endoderm.

Yang D, Lutter D, Burtscher I, Uetzmann L, Theis FJ, Lickert H. Yang D, et al. Among authors: theis fj. Development. 2014 Feb;141(3):514-25. doi: 10.1242/dev.104232. Development. 2014. PMID: 24449834

3

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.

Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. Buettner F, et al. Among authors: theis fj. Nat Biotechnol. 2015 Feb;33(2):155-60. doi: 10.1038/nbt.3102. Epub 2015 Jan 19. Nat Biotechnol. 2015. PMID: 25599176

4

Diffusion maps for high-dimensional single-cell analysis of differentiation data.

Haghverdi L, Buettner F, Theis FJ. Haghverdi L, et al. Among authors: theis fj. Bioinformatics. 2015 Sep 15;31(18):2989-98. doi: 10.1093/bioinformatics/btv325. Epub 2015 May 21. Bioinformatics. 2015. PMID: 26002886

5

Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations.

Wilson NK, Kent DG, Buettner F, Shehata M, Macaulay IC, Calero-Nieto FJ, Sánchez Castillo M, Oedekoven CA, Diamanti E, Schulte R, Ponting CP, Voet T, Caldas C, Stingl J, Green AR, Theis FJ, Göttgens B. Wilson NK, et al. Among authors: theis fj. Cell Stem Cell. 2015 Jun 4;16(6):712-24. doi: 10.1016/j.stem.2015.04.004. Epub 2015 May 21. Cell Stem Cell. 2015. PMID: 26004780 Free PMC article.

6

Quantification of regenerative potential in primary human mammary epithelial cells.

Linnemann JR, Miura H, Meixner LK, Irmler M, Kloos UJ, Hirschi B, Bartsch HS, Sass S, Beckers J, Theis FJ, Gabka C, Sotlar K, Scheel CH. Linnemann JR, et al. Among authors: theis fj. Development. 2015 Sep 15;142(18):3239-51. doi: 10.1242/dev.123554. Epub 2015 Jun 12. Development. 2015. PMID: 26071498 Free PMC article.

7

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data.

Ocone A, Haghverdi L, Mueller NS, Theis FJ. Ocone A, et al. Among authors: theis fj. Bioinformatics. 2015 Jun 15;31(12):i89-96. doi: 10.1093/bioinformatics/btv257. Bioinformatics. 2015. PMID: 26072513 Free PMC article.

8

destiny: diffusion maps for large-scale single-cell data in R.

Angerer P, Haghverdi L, Büttner M, Theis FJ, Marr C, Buettner F. Angerer P, et al. Among authors: theis fj. Bioinformatics. 2016 Apr 15;32(8):1241-3. doi: 10.1093/bioinformatics/btv715. Epub 2015 Dec 14. Bioinformatics. 2016. PMID: 26668002

9

cgCorrect: a method to correct for confounding cell-cell variation due to cell growth in single-cell transcriptomics.

Blasi T, Buettner F, Strasser MK, Marr C, Theis FJ. Blasi T, et al. Among authors: theis fj. Phys Biol. 2017 May 11;14(3):036001. doi: 10.1088/1478-3975/aa609a. Phys Biol. 2017. PMID: 28198357

10

Model-based branching point detection in single-cell data by K-branches clustering.

Chlis NK, Wolf FA, Theis FJ. Chlis NK, et al. Among authors: theis fj. Bioinformatics. 2017 Oct 15;33(20):3211-3219. doi: 10.1093/bioinformatics/btx325. Bioinformatics. 2017. PMID: 28582478 Free PMC article.

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