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Developmental transcriptional control of mitochondrial homeostasis is required for activity-dependent synaptic connectivity.
Mohylyak I, Bengochea M, Pascual-Caro C, Asfogo N, Fonseca-Topp S, Danda N, Atak ZK, De Waegeneer M, Plaçais PY, Preat T, Aerts S, Corti O, de Juan-Sanz J, Hassan BA. Mohylyak I, et al. Among authors: atak zk. bioRxiv [Preprint]. 2023 Jun 11:2023.06.11.544500. doi: 10.1101/2023.06.11.544500. bioRxiv. 2023. PMID: 37333418 Free PMC article. Preprint.
Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation.
Naus E, Derweduwe M, Lampi Y, Claeys A, Pauwels J, Langenberg T, Claes F, Xu J, Haemels V, Atak ZK, van der Kant R, Van Durme J, De Baets G, Ligon KL, Fiers M, Gevaert K, Aerts S, Rousseau F, Schymkowitz J, De Smet F. Naus E, et al. Among authors: atak zk. Cells. 2023 Mar 21;12(6):960. doi: 10.3390/cells12060960. Cells. 2023. PMID: 36980299 Free PMC article.
A Multi-Omics Analysis of Metastatic Melanoma Identifies a Germinal Center-Like Tumor Microenvironment in HLA-DR-Positive Tumor Areas.
Gadeyne L, Van Herck Y, Milli G, Atak ZK, Bolognesi MM, Wouters J, Marcelis L, Minia A, Pliaka V, Roznac J, Alexopoulos LG, Cattoretti G, Bechter O, Oord JVD, De Smet F, Antoranz A, Bosisio FM. Gadeyne L, et al. Among authors: atak zk. Front Oncol. 2021 Mar 25;11:636057. doi: 10.3389/fonc.2021.636057. eCollection 2021. Front Oncol. 2021. PMID: 33842341 Free PMC article.
Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation.
Varum S, Baggiolini A, Zurkirchen L, Atak ZK, Cantù C, Marzorati E, Bossart R, Wouters J, Häusel J, Tuncer E, Zingg D, Veen D, John N, Balz M, Levesque MP, Basler K, Aerts S, Zamboni N, Dummer R, Sommer L. Varum S, et al. Among authors: atak zk. Cell Stem Cell. 2019 Apr 4;24(4):637-653.e9. doi: 10.1016/j.stem.2019.03.011. Cell Stem Cell. 2019. PMID: 30951662 Free article.
A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing.
Verboom K, Van Loocke W, Volders PJ, Decaesteker B, Cobos FA, Bornschein S, de Bock CE, Atak ZK, Clappier E, Aerts S, Cools J, Soulier J, Taghon T, Van Vlierberghe P, Vandesompele J, Speleman F, Durinck K. Verboom K, et al. Among authors: atak zk. Haematologica. 2018 Dec;103(12):e585-e589. doi: 10.3324/haematol.2018.190587. Epub 2018 Jun 28. Haematologica. 2018. PMID: 29954933 Free PMC article. No abstract available.
SCENIC: single-cell regulatory network inference and clustering.
Aibar S, González-Blas CB, Moerman T, Huynh-Thu VA, Imrichova H, Hulselmans G, Rambow F, Marine JC, Geurts P, Aerts J, van den Oord J, Atak ZK, Wouters J, Aerts S. Aibar S, et al. Among authors: atak zk. Nat Methods. 2017 Nov;14(11):1083-1086. doi: 10.1038/nmeth.4463. Epub 2017 Oct 9. Nat Methods. 2017. PMID: 28991892 Free PMC article.
Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state.
Verfaillie A, Imrichova H, Atak ZK, Dewaele M, Rambow F, Hulselmans G, Christiaens V, Svetlichnyy D, Luciani F, Van den Mooter L, Claerhout S, Fiers M, Journe F, Ghanem GE, Herrmann C, Halder G, Marine JC, Aerts S. Verfaillie A, et al. Among authors: atak zk. Nat Commun. 2015 Apr 9;6:6683. doi: 10.1038/ncomms7683. Nat Commun. 2015. PMID: 25865119 Free PMC article.
15 results