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Contribution of bacterial and host factors to pathogen "blooming" in a gnotobiotic mouse model for Salmonella enterica serovar Typhimurium-induced enterocolitis.
Beutler M, Eberl C, Garzetti D, Herp S, Münch P, Ring D, Dolowschiak T, Brugiroux S, Schiller P, Hussain S, Basic M, Bleich A, Stecher B. Beutler M, et al. Among authors: munch p. Infect Immun. 2024 Feb 13;92(2):e0031823. doi: 10.1128/iai.00318-23. Epub 2024 Jan 8. Infect Immun. 2024. PMID: 38189339
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium.
Brugiroux S, Beutler M, Pfann C, Garzetti D, Ruscheweyh HJ, Ring D, Diehl M, Herp S, Lötscher Y, Hussain S, Bunk B, Pukall R, Huson DH, Münch PC, McHardy AC, McCoy KD, Macpherson AJ, Loy A, Clavel T, Berry D, Stecher B. Brugiroux S, et al. Nat Microbiol. 2016 Nov 21;2:16215. doi: 10.1038/nmicrobiol.2016.215. Nat Microbiol. 2016. PMID: 27869789
EDEN: evolutionary dynamics within environments.
Münch PC, Stecher B, McHardy AC. Münch PC, et al. Bioinformatics. 2017 Oct 15;33(20):3292-3295. doi: 10.1093/bioinformatics/btx394. Bioinformatics. 2017. PMID: 28637301 Free PMC article.
In vitro interaction network of a synthetic gut bacterial community.
Weiss AS, Burrichter AG, Durai Raj AC, von Strempel A, Meng C, Kleigrewe K, Münch PC, Rössler L, Huber C, Eisenreich W, Jochum LM, Göing S, Jung K, Lincetto C, Hübner J, Marinos G, Zimmermann J, Kaleta C, Sanchez A, Stecher B. Weiss AS, et al. ISME J. 2022 Apr;16(4):1095-1109. doi: 10.1038/s41396-021-01153-z. Epub 2021 Dec 2. ISME J. 2022. PMID: 34857933 Free PMC article.
Author Correction: Optimized model architectures for deep learning on genomic data.
Gündüz HA, Mreches R, Moosbauer J, Robertson G, To XY, Franzosa EA, Huttenhower C, Rezaei M, McHardy AC, Bischl B, Münch PC, Binder M. Gündüz HA, et al. Among authors: munch pc. Commun Biol. 2024 May 23;7(1):625. doi: 10.1038/s42003-024-06318-y. Commun Biol. 2024. PMID: 38783006 Free PMC article. No abstract available.
Functional overlap of the Arabidopsis leaf and root microbiota.
Bai Y, Müller DB, Srinivas G, Garrido-Oter R, Potthoff E, Rott M, Dombrowski N, Münch PC, Spaepen S, Remus-Emsermann M, Hüttel B, McHardy AC, Vorholt JA, Schulze-Lefert P. Bai Y, et al. Among authors: munch pc. Nature. 2015 Dec 17;528(7582):364-9. doi: 10.1038/nature16192. Epub 2015 Dec 2. Nature. 2015. PMID: 26633631
83 results