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PCA-Plus: Enhanced principal component analysis with illustrative applications to batch effects and their quantitation.
bioRxiv [Preprint]. 2024 Jan 3:2024.01.02.573793. doi: 10.1101/2024.01.02.573793.
bioRxiv. 2024.
PMID: 38260566
Free PMC article.
Preprint.
A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data.
Broom BM, Ryan MC, Brown RE, Ikeda F, Stucky M, Kane DW, Melott J, Wakefield C, Casasent TD, Akbani R, Weinstein JN.
Broom BM, et al. Among authors: casasent td.
Cancer Res. 2017 Nov 1;77(21):e23-e26. doi: 10.1158/0008-5472.CAN-17-0318.
Cancer Res. 2017.
PMID: 29092932
Free PMC article.
Item in Clipboard
Comprehensive molecular characterization of urothelial bladder carcinoma.
Cancer Genome Atlas Research Network.
Cancer Genome Atlas Research Network.
Nature. 2014 Mar 20;507(7492):315-22. doi: 10.1038/nature12965. Epub 2014 Jan 29.
Nature. 2014.
PMID: 24476821
Free PMC article.
Item in Clipboard
The Cancer Genome Atlas Pan-Cancer analysis project.
Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM.
Cancer Genome Atlas Research Network, et al.
Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764.
Nat Genet. 2013.
PMID: 24071849
Free PMC article.
Item in Clipboard
Comprehensive molecular characterization of clear cell renal cell carcinoma.
Cancer Genome Atlas Research Network.
Cancer Genome Atlas Research Network.
Nature. 2013 Jul 4;499(7456):43-9. doi: 10.1038/nature12222. Epub 2013 Jun 23.
Nature. 2013.
PMID: 23792563
Free PMC article.
Item in Clipboard
Integrated genomic characterization of endometrial carcinoma.
Cancer Genome Atlas Research Network; Kandoth C, Schultz N, Cherniack AD, Akbani R, Liu Y, Shen H, Robertson AG, Pashtan I, Shen R, Benz CC, Yau C, Laird PW, Ding L, Zhang W, Mills GB, Kucherlapati R, Mardis ER, Levine DA.
Cancer Genome Atlas Research Network, et al.
Nature. 2013 May 2;497(7447):67-73. doi: 10.1038/nature12113.
Nature. 2013.
PMID: 23636398
Free PMC article.
Item in Clipboard
Comprehensive molecular portraits of human breast tumours.
Cancer Genome Atlas Network.
Cancer Genome Atlas Network.
Nature. 2012 Oct 4;490(7418):61-70. doi: 10.1038/nature11412. Epub 2012 Sep 23.
Nature. 2012.
PMID: 23000897
Free PMC article.
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