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Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pan-genome hybrid selection.
bioRxiv [Preprint]. 2024 Feb 29:2024.02.29.582780. doi: 10.1101/2024.02.29.582780.
bioRxiv. 2024.
PMID: 38463963
Free PMC article.
Preprint.
Strain Tracking with Uncertainty Quantification.
Kim Y, Worby CJ, Acharya S, van Dijk LR, Alfonsetti D, Gromko Z, Azimzadeh P, Dodson K, Gerber G, Hultgren S, Earl AM, Berger B, Gibson TE.
Kim Y, et al. Among authors: van dijk lr.
bioRxiv [Preprint]. 2023 Jan 26:2023.01.25.525531. doi: 10.1101/2023.01.25.525531.
bioRxiv. 2023.
PMID: 36747646
Free PMC article.
Preprint.
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Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women.
Worby CJ, Schreiber HL 4th, Straub TJ, van Dijk LR, Bronson RA, Olson BS, Pinkner JS, Obernuefemann CLP, Muñoz VL, Paharik AE, Azimzadeh PN, Walker BJ, Desjardins CA, Chou WC, Bergeron K, Chapman SB, Klim A, Manson AL, Hannan TJ, Hooton TM, Kau AL, Lai HH, Dodson KW, Hultgren SJ, Earl AM.
Worby CJ, et al. Among authors: van dijk lr.
Nat Microbiol. 2022 May;7(5):630-639. doi: 10.1038/s41564-022-01107-x. Epub 2022 May 2.
Nat Microbiol. 2022.
PMID: 35505248
Free PMC article.
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StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities.
van Dijk LR, Walker BJ, Straub TJ, Worby CJ, Grote A, Schreiber HL 4th, Anyansi C, Pickering AJ, Hultgren SJ, Manson AL, Abeel T, Earl AM.
van Dijk LR, et al.
Genome Biol. 2022 Mar 7;23(1):74. doi: 10.1186/s13059-022-02630-0.
Genome Biol. 2022.
PMID: 35255937
Free PMC article.
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