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Scipion3: A workflow engine for cryo-electron microscopy image processing and structural biology.
Biol Imaging. 2023 Jun 29;3:e13. doi: 10.1017/S2633903X23000132. eCollection 2023.
Biol Imaging. 2023.
PMID: 38510163
Free PMC article.
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation.
Jiménez de la Morena J, Conesa P, Fonseca YC, de Isidro-Gómez FP, Herreros D, Fernández-Giménez E, Strelak D, Moebel E, Buchholz TO, Jug F, Martinez-Sanchez A, Harastani M, Jonic S, Conesa JJ, Cuervo A, Losana P, Sánchez I, Iceta M, Del Cano L, Gragera M, Melero R, Sharov G, Castaño-Díez D, Koster A, Piccirillo JG, Vilas JL, Otón J, Marabini R, Sorzano COS, Carazo JM.
Jiménez de la Morena J, et al.
J Struct Biol. 2022 Sep;214(3):107872. doi: 10.1016/j.jsb.2022.107872. Epub 2022 Jun 2.
J Struct Biol. 2022.
PMID: 35660516
Free PMC article.
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On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy.
Sorzano COS, Jiménez-Moreno A, Maluenda D, Martínez M, Ramírez-Aportela E, Krieger J, Melero R, Cuervo A, Conesa J, Filipovic J, Conesa P, Del Caño L, Fonseca YC, Jiménez-de la Morena J, Losana P, Sánchez-García R, Strelak D, Fernández-Giménez E, de Isidro-Gómez FP, Herreros D, Vilas JL, Marabini R, Carazo JM.
Sorzano COS, et al. Among authors: jimenez de la morena j.
Acta Crystallogr D Struct Biol. 2022 Apr 1;78(Pt 4):410-423. doi: 10.1107/S2059798322001978. Epub 2022 Mar 16.
Acta Crystallogr D Struct Biol. 2022.
PMID: 35362465
Free PMC article.
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Cryo-EM and Single-Particle Analysis with Scipion.
Jiménez-Moreno A, Del Caño L, Martínez M, Ramírez-Aportela E, Cuervo A, Melero R, Sánchez-García R, Strelak D, Fernández-Giménez E, de Isidro-Gómez FP, Herreros D, Conesa P, Fonseca Y, Maluenda D, Jiménez de la Morena J, Macías JR, Losana P, Marabini R, Carazo JM, Sorzano COS.
Jiménez-Moreno A, et al. Among authors: jimenez de la morena j.
J Vis Exp. 2021 May 29;(171). doi: 10.3791/62261.
J Vis Exp. 2021.
PMID: 34125107
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