1R01AI076318/AI/NIAID NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2010	1
2011	1
2012	6
2013	4
2014	3
2015	3
2016	2
2024	0

1

Medoidshift clustering applied to genomic bulk tumor data.

Roman T, Xie L, Schwartz R. Roman T, et al. BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):6. doi: 10.1186/s12864-015-2302-x. BMC Genomics. 2016. PMID: 26817708 Free PMC article.

2

A simplicial complex-based approach to unmixing tumor progression data.

Roman T, Nayyeri A, Fasy BT, Schwartz R. Roman T, et al. BMC Bioinformatics. 2015 Aug 12;16:254. doi: 10.1186/s12859-015-0694-x. BMC Bioinformatics. 2015. PMID: 26264682 Free PMC article.

3

Phylogenetic analysis of multiple FISH markers in oral tongue squamous cell carcinoma suggests that a diverse distribution of copy number changes is associated with poor prognosis.

Wangsa D, Chowdhury SA, Ryott M, Gertz EM, Elmberger G, Auer G, Åvall Lundqvist E, Küffer S, Ströbel P, Schäffer AA, Schwartz R, Munck-Wikland E, Ried T, Heselmeyer-Haddad K. Wangsa D, et al. Int J Cancer. 2016 Jan 1;138(1):98-109. doi: 10.1002/ijc.29691. Epub 2015 Aug 28. Int J Cancer. 2016. PMID: 26175310 Free PMC article.

4

Inferring models of multiscale copy number evolution for single-tumor phylogenetics.

Chowdhury SA, Gertz EM, Wangsa D, Heselmeyer-Haddad K, Ried T, Schäffer AA, Schwartz R. Chowdhury SA, et al. Bioinformatics. 2015 Jun 15;31(12):i258-67. doi: 10.1093/bioinformatics/btv233. Bioinformatics. 2015. PMID: 26072490 Free PMC article.

5

Phenotypic signatures arising from unbalanced bacterial growth.

Tan C, Smith RP, Tsai MC, Schwartz R, You L. Tan C, et al. PLoS Comput Biol. 2014 Aug 7;10(8):e1003751. doi: 10.1371/journal.pcbi.1003751. eCollection 2014 Aug. PLoS Comput Biol. 2014. PMID: 25101949 Free PMC article.

6

Algorithms to model single gene, single chromosome, and whole genome copy number changes jointly in tumor phylogenetics.

Chowdhury SA, Shackney SE, Heselmeyer-Haddad K, Ried T, Schäffer AA, Schwartz R. Chowdhury SA, et al. PLoS Comput Biol. 2014 Jul 31;10(7):e1003740. doi: 10.1371/journal.pcbi.1003740. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25078894 Free PMC article.

7

Applying molecular crowding models to simulations of virus capsid assembly in vitro.

Smith GR, Xie L, Lee B, Schwartz R. Smith GR, et al. Biophys J. 2014 Jan 7;106(1):310-20. doi: 10.1016/j.bpj.2013.11.022. Biophys J. 2014. PMID: 24411263 Free PMC article.

8

Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles.

Subramanian A, Shackney S, Schwartz R. Subramanian A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1422-31. doi: 10.1109/TCBB.2013.33. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24407301 Free PMC article.

9

Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data.

Tsai MC, Blelloch G, Ravi R, Schwartz R. Tsai MC, et al. IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1137-49. doi: 10.1109/tcbb.2013.98. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 23959633 Free PMC article.

10

Molecular crowding shapes gene expression in synthetic cellular nanosystems.

Tan C, Saurabh S, Bruchez MP, Schwartz R, Leduc P. Tan C, et al. Nat Nanotechnol. 2013 Aug;8(8):602-8. doi: 10.1038/nnano.2013.132. Epub 2013 Jul 14. Nat Nanotechnol. 2013. PMID: 23851358 Free PMC article.

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