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Genomics-informed outbreak investigations of SARS-CoV-2 using civet.
O'Toole Á, Hill V, Jackson B, Dewar R, Sahadeo N, Colquhoun R, Rooke S, McCrone JT, Duggan K, McHugh MP, Nicholls SM, Poplawski R; COVID-19 Genomics UK (COG-UK) Consortium; COVID-19 Impact Project (Trinidad & Tobago Group); Aanensen D, Holden M, Connor T, Loman N, Goodfellow I, Carrington CVF, Templeton K, Rambaut A. O'Toole Á, et al. PLOS Glob Public Health. 2022 Dec 9;2(12):e0000704. doi: 10.1371/journal.pgph.0000704. eCollection 2022. PLOS Glob Public Health. 2022. PMID: 36962792 Free PMC article.
Comparing genomic variant identification protocols for Candida auris.
Li X, Muñoz JF, Gade L, Argimon S, Bougnoux ME, Bowers JR, Chow NA, Cuesta I, Farrer RA, Maufrais C, Monroy-Nieto J, Pradhan D, Uehling J, Vu D, Yeats CA, Aanensen DM, d'Enfert C, Engelthaler DM, Eyre DW, Fisher MC, Hagen F, Meyer W, Singh G, Alastruey-Izquierdo A, Litvintseva AP, Cuomo CA. Li X, et al. Among authors: aanensen dm. Microb Genom. 2023 Apr;9(4):mgen000979. doi: 10.1099/mgen.0.000979. Microb Genom. 2023. PMID: 37043380 Free PMC article.
Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes.
Bentley SD, Aanensen DM, Mavroidi A, Saunders D, Rabbinowitsch E, Collins M, Donohoe K, Harris D, Murphy L, Quail MA, Samuel G, Skovsted IC, Kaltoft MS, Barrell B, Reeves PR, Parkhill J, Spratt BG. Bentley SD, et al. Among authors: aanensen dm. PLoS Genet. 2006 Mar;2(3):e31. doi: 10.1371/journal.pgen.0020031. Epub 2006 Mar 10. PLoS Genet. 2006. PMID: 16532061 Free PMC article.
Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens.
Holden MT, Heather Z, Paillot R, Steward KF, Webb K, Ainslie F, Jourdan T, Bason NC, Holroyd NE, Mungall K, Quail MA, Sanders M, Simmonds M, Willey D, Brooks K, Aanensen DM, Spratt BG, Jolley KA, Maiden MC, Kehoe M, Chanter N, Bentley SD, Robinson C, Maskell DJ, Parkhill J, Waller AS. Holden MT, et al. Among authors: aanensen dm. PLoS Pathog. 2009 Mar;5(3):e1000346. doi: 10.1371/journal.ppat.1000346. Epub 2009 Mar 27. PLoS Pathog. 2009. PMID: 19325880 Free PMC article.
Comparison of two multilocus sequence based genotyping schemes for Leptospira species.
Ahmed A, Thaipadungpanit J, Boonsilp S, Wuthiekanun V, Nalam K, Spratt BG, Aanensen DM, Smythe LD, Ahmed N, Feil EJ, Hartskeerl RA, Peacock SJ. Ahmed A, et al. Among authors: aanensen dm. PLoS Negl Trop Dis. 2011 Nov;5(11):e1374. doi: 10.1371/journal.pntd.0001374. Epub 2011 Nov 8. PLoS Negl Trop Dis. 2011. PMID: 22087342 Free PMC article.
Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus.
McAdam PR, Templeton KE, Edwards GF, Holden MT, Feil EJ, Aanensen DM, Bargawi HJ, Spratt BG, Bentley SD, Parkhill J, Enright MC, Holmes A, Girvan EK, Godfrey PA, Feldgarden M, Kearns AM, Rambaut A, Robinson DA, Fitzgerald JR. McAdam PR, et al. Among authors: aanensen dm. Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):9107-12. doi: 10.1073/pnas.1202869109. Epub 2012 May 14. Proc Natl Acad Sci U S A. 2012. PMID: 22586109 Free PMC article.
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic.
Holden MT, Hsu LY, Kurt K, Weinert LA, Mather AE, Harris SR, Strommenger B, Layer F, Witte W, de Lencastre H, Skov R, Westh H, Zemlicková H, Coombs G, Kearns AM, Hill RL, Edgeworth J, Gould I, Gant V, Cooke J, Edwards GF, McAdam PR, Templeton KE, McCann A, Zhou Z, Castillo-Ramírez S, Feil EJ, Hudson LO, Enright MC, Balloux F, Aanensen DM, Spratt BG, Fitzgerald JR, Parkhill J, Achtman M, Bentley SD, Nübel U. Holden MT, et al. Among authors: aanensen dm. Genome Res. 2013 Apr;23(4):653-64. doi: 10.1101/gr.147710.112. Epub 2013 Jan 8. Genome Res. 2013. PMID: 23299977 Free PMC article.
A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species.
Boonsilp S, Thaipadungpanit J, Amornchai P, Wuthiekanun V, Bailey MS, Holden MT, Zhang C, Jiang X, Koizumi N, Taylor K, Galloway R, Hoffmaster AR, Craig S, Smythe LD, Hartskeerl RA, Day NP, Chantratita N, Feil EJ, Aanensen DM, Spratt BG, Peacock SJ. Boonsilp S, et al. Among authors: aanensen dm. PLoS Negl Trop Dis. 2013;7(1):e1954. doi: 10.1371/journal.pntd.0001954. Epub 2013 Jan 24. PLoS Negl Trop Dis. 2013. PMID: 23359622 Free PMC article.
153 results