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Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation.
Science. 2020 Jul 24;369(6502):eaav3751. doi: 10.1126/science.aav3751.
Science. 2020.
PMID: 32703847
Free PMC article.
The E. coli Whole-Cell Modeling Project.
Sun G, Ahn-Horst TA, Covert MW.
Sun G, et al. Among authors: ahn horst ta.
EcoSal Plus. 2021 Dec 15;9(2):eESP00012020. doi: 10.1128/ecosalplus.ESP-0001-2020. Epub 2021 Jul 9.
EcoSal Plus. 2021.
PMID: 34242084
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An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control.
Ahn-Horst TA, Mille LS, Sun G, Morrison JH, Covert MW.
Ahn-Horst TA, et al.
NPJ Syst Biol Appl. 2022 Aug 19;8(1):30. doi: 10.1038/s41540-022-00242-9.
NPJ Syst Biol Appl. 2022.
PMID: 35986058
Free PMC article.
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Cross-evaluation of E. coli's operon structures via a whole-cell model suggests alternative cellular benefits for low- versus high-expressing operons.
Sun G, DeFelice MM, Gillies TE, Ahn-Horst TA, Andrews CJ, Krummenacker M, Karp PD, Morrison JH, Covert MW.
Sun G, et al. Among authors: ahn horst ta.
Cell Syst. 2024 Mar 20;15(3):227-245.e7. doi: 10.1016/j.cels.2024.02.002. Epub 2024 Feb 27.
Cell Syst. 2024.
PMID: 38417437
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The EcoCyc Database (2023).
Karp PD, Paley S, Caspi R, Kothari A, Krummenacker M, Midford PE, Moore LR, Subhraveti P, Gama-Castro S, Tierrafria VH, Lara P, Muñiz-Rascado L, Bonavides-Martinez C, Santos-Zavaleta A, Mackie A, Sun G, Ahn-Horst TA, Choi H, Covert MW, Collado-Vides J, Paulsen I.
Karp PD, et al. Among authors: ahn horst ta.
EcoSal Plus. 2023 Dec 12;11(1):eesp00022023. doi: 10.1128/ecosalplus.esp-0002-2023. Epub 2023 May 11.
EcoSal Plus. 2023.
PMID: 37220074
Free article.
Review.
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