Alber F - Search Results

1

Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer.

Stackpole ML, Zeng W, Li S, Liu CC, Zhou Y, He S, Yeh A, Wang Z, Sun F, Li Q, Yuan Z, Yildirim A, Chen PJ, Winograd P, Tran B, Lee YT, Li PS, Noor Z, Yokomizo M, Ahuja P, Zhu Y, Tseng HR, Tomlinson JS, Garon E, French S, Magyar CE, Dry S, Lajonchere C, Geschwind D, Choi G, Saab S, Alber F, Wong WH, Dubinett SM, Aberle DR, Agopian V, Han SB, Ni X, Li W, Zhou XJ. Stackpole ML, et al. Among authors: alber f. Nat Commun. 2022 Sep 29;13(1):5566. doi: 10.1038/s41467-022-32995-6. Nat Commun. 2022. PMID: 36175411 Free PMC article.

2

Zooming in on genome organization.

Zhou XJ, Alber F. Zhou XJ, et al. Among authors: alber f. Nat Methods. 2012 Oct;9(10):961-3. doi: 10.1038/nmeth.2181. Nat Methods. 2012. PMID: 23018997 Free PMC article. No abstract available.

3

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data.

Li W, Gong K, Li Q, Alber F, Zhou XJ. Li W, et al. Among authors: alber f. Bioinformatics. 2015 Mar 15;31(6):960-2. doi: 10.1093/bioinformatics/btu747. Epub 2014 Nov 12. Bioinformatics. 2015. PMID: 25391400 Free PMC article.

4

Comparative 3D genome structure analysis of the fission and the budding yeast.

Gong K, Tjong H, Zhou XJ, Alber F. Gong K, et al. Among authors: alber f. PLoS One. 2015 Mar 23;10(3):e0119672. doi: 10.1371/journal.pone.0119672. eCollection 2015. PLoS One. 2015. PMID: 25799503 Free PMC article.

5

TopDom: an efficient and deterministic method for identifying topological domains in genomes.

Shin H, Shi Y, Dai C, Tjong H, Gong K, Alber F, Zhou XJ. Shin H, et al. Among authors: alber f. Nucleic Acids Res. 2016 Apr 20;44(7):e70. doi: 10.1093/nar/gkv1505. Epub 2015 Dec 23. Nucleic Acids Res. 2016. PMID: 26704975 Free PMC article.

6

Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.

Tjong H, Li W, Kalhor R, Dai C, Hao S, Gong K, Zhou Y, Li H, Zhou XJ, Le Gros MA, Larabell CA, Chen L, Alber F. Tjong H, et al. Among authors: alber f. Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1663-72. doi: 10.1073/pnas.1512577113. Epub 2016 Mar 7. Proc Natl Acad Sci U S A. 2016. PMID: 26951677 Free PMC article.

7

Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities.

Dai C, Li W, Tjong H, Hao S, Zhou Y, Li Q, Chen L, Zhu B, Alber F, Jasmine Zhou X. Dai C, et al. Among authors: alber f. Nat Commun. 2016 May 31;7:11549. doi: 10.1038/ncomms11549. Nat Commun. 2016. PMID: 27240697 Free PMC article.

8

CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA.

Kang S, Li Q, Chen Q, Zhou Y, Park S, Lee G, Grimes B, Krysan K, Yu M, Wang W, Alber F, Sun F, Dubinett SM, Li W, Zhou XJ. Kang S, et al. Among authors: alber f. Genome Biol. 2017 Mar 24;18(1):53. doi: 10.1186/s13059-017-1191-5. Genome Biol. 2017. PMID: 28335812 Free PMC article.

9

The three-dimensional genome organization of Drosophila melanogaster through data integration.

Li Q, Tjong H, Li X, Gong K, Zhou XJ, Chiolo I, Alber F. Li Q, et al. Among authors: alber f. Genome Biol. 2017 Jul 31;18(1):145. doi: 10.1186/s13059-017-1264-5. Genome Biol. 2017. PMID: 28760140 Free PMC article.

10

Producing genome structure populations with the dynamic and automated PGS software.

Hua N, Tjong H, Shin H, Gong K, Zhou XJ, Alber F. Hua N, et al. Among authors: alber f. Nat Protoc. 2018 May;13(5):915-926. doi: 10.1038/nprot.2018.008. Epub 2018 Apr 5. Nat Protoc. 2018. PMID: 29622804 Free PMC article.

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