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Page 1
Protein Dynamics to Define and Refine Disordered Protein Ensembles.
J Phys Chem B. 2022 Mar 10;126(9):1885-1894. doi: 10.1021/acs.jpcb.1c10925. Epub 2022 Feb 25.
J Phys Chem B. 2022.
PMID: 35213160
Free PMC article.
Integrative Conformational Ensembles of Sic1 Using Different Initial Pools and Optimization Methods.
Gomes GW, Namini A, Gradinaru CC.
Gomes GW, et al. Among authors: namini a.
Front Mol Biosci. 2022 Jul 18;9:910956. doi: 10.3389/fmolb.2022.910956. eCollection 2022.
Front Mol Biosci. 2022.
PMID: 35923464
Free PMC article.
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Learning Correlations between Internal Coordinates to Improve 3D Cartesian Coordinates for Proteins.
Li J, Zhang O, Lee S, Namini A, Liu ZH, Teixeira JMC, Forman-Kay JD, Head-Gordon T.
Li J, et al. Among authors: namini a.
J Chem Theory Comput. 2023 Jul 25;19(14):4689-4700. doi: 10.1021/acs.jctc.2c01270. Epub 2023 Feb 7.
J Chem Theory Comput. 2023.
PMID: 36749957
Free PMC article.
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IDPConformerGenerator: A Flexible Software Suite for Sampling the Conformational Space of Disordered Protein States.
Teixeira JMC, Liu ZH, Namini A, Li J, Vernon RM, Krzeminski M, Shamandy AA, Zhang O, Haghighatlari M, Yu L, Head-Gordon T, Forman-Kay JD.
Teixeira JMC, et al. Among authors: namini a.
J Phys Chem A. 2022 Sep 8;126(35):5985-6003. doi: 10.1021/acs.jpca.2c03726. Epub 2022 Aug 28.
J Phys Chem A. 2022.
PMID: 36030416
Free PMC article.
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Learning to evolve structural ensembles of unfolded and disordered proteins using experimental solution data.
Zhang O, Haghighatlari M, Li J, Liu ZH, Namini A, Teixeira JMC, Forman-Kay JD, Head-Gordon T.
Zhang O, et al. Among authors: namini a.
J Chem Phys. 2023 May 7;158(17):174113. doi: 10.1063/5.0141474.
J Chem Phys. 2023.
PMID: 37144719
Free PMC article.
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Conformational Ensembles of an Intrinsically Disordered Protein Consistent with NMR, SAXS, and Single-Molecule FRET.
Gomes GW, Krzeminski M, Namini A, Martin EW, Mittag T, Head-Gordon T, Forman-Kay JD, Gradinaru CC.
Gomes GW, et al. Among authors: namini a.
J Am Chem Soc. 2020 Sep 16;142(37):15697-15710. doi: 10.1021/jacs.0c02088. Epub 2020 Sep 4.
J Am Chem Soc. 2020.
PMID: 32840111
Free PMC article.
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