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Scaffolding protein functional sites using deep learning.
Wang J, Lisanza S, Juergens D, Tischer D, Watson JL, Castro KM, Ragotte R, Saragovi A, Milles LF, Baek M, Anishchenko I, Yang W, Hicks DR, Expòsit M, Schlichthaerle T, Chun JH, Dauparas J, Bennett N, Wicky BIM, Muenks A, DiMaio F, Correia B, Ovchinnikov S, Baker D. Wang J, et al. Among authors: baker d. Science. 2022 Jul 22;377(6604):387-394. doi: 10.1126/science.abn2100. Epub 2022 Jul 21. Science. 2022. PMID: 35862514 Free PMC article.
Coupled prediction of protein secondary and tertiary structure.
Meiler J, Baker D. Meiler J, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12105-10. doi: 10.1073/pnas.1831973100. Epub 2003 Oct 3. Proc Natl Acad Sci U S A. 2003. PMID: 14528006 Free PMC article.
Computational redesign of protein-protein interaction specificity.
Kortemme T, Joachimiak LA, Bullock AN, Schuler AD, Stoddard BL, Baker D. Kortemme T, et al. Among authors: baker d. Nat Struct Mol Biol. 2004 Apr;11(4):371-9. doi: 10.1038/nsmb749. Epub 2004 Mar 21. Nat Struct Mol Biol. 2004. PMID: 15034550
Improved side-chain modeling for protein-protein docking.
Wang C, Schueler-Furman O, Baker D. Wang C, et al. Among authors: baker d. Protein Sci. 2005 May;14(5):1328-39. doi: 10.1110/ps.041222905. Epub 2005 Mar 31. Protein Sci. 2005. PMID: 15802647 Free PMC article.
Computational thermostabilization of an enzyme.
Korkegian A, Black ME, Baker D, Stoddard BL. Korkegian A, et al. Among authors: baker d. Science. 2005 May 6;308(5723):857-60. doi: 10.1126/science.1107387. Science. 2005. PMID: 15879217 Free PMC article.
5,643 results