Bazinet AL - Search Results

1

A comparative evaluation of sequence classification programs.

Bazinet AL, Cummings MP. Bazinet AL, et al. BMC Bioinformatics. 2012 May 10;13:92. doi: 10.1186/1471-2105-13-92. BMC Bioinformatics. 2012. PMID: 22574964 Free PMC article.

2

Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.

Huson DH, Tappu R, Bazinet AL, Xie C, Cummings MP, Nieselt K, Williams R. Huson DH, et al. Among authors: bazinet al. Microbiome. 2017 Jan 25;5(1):11. doi: 10.1186/s40168-017-0233-2. Microbiome. 2017. PMID: 28122610 Free PMC article.

3

Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study.

Regier JC, Zwick A, Cummings MP, Kawahara AY, Cho S, Weller S, Roe A, Baixeras J, Brown JW, Parr C, Davis DR, Epstein M, Hallwachs W, Hausmann A, Janzen DH, Kitching IJ, Solis MA, Yen SH, Bazinet AL, Mitter C. Regier JC, et al. Among authors: bazinet al. BMC Evol Biol. 2009 Dec 2;9:280. doi: 10.1186/1471-2148-9-280. BMC Evol Biol. 2009. PMID: 19954545 Free PMC article.

4

A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies).

Regier JC, Mitter C, Zwick A, Bazinet AL, Cummings MP, Kawahara AY, Sohn JC, Zwickl DJ, Cho S, Davis DR, Baixeras J, Brown J, Parr C, Weller S, Lees DC, Mitter KT. Regier JC, et al. Among authors: bazinet al. PLoS One. 2013;8(3):e58568. doi: 10.1371/journal.pone.0058568. Epub 2013 Mar 12. PLoS One. 2013. PMID: 23554903 Free PMC article.

5

Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study.

Bazinet AL, Cummings MP, Mitter KT, Mitter CW. Bazinet AL, et al. PLoS One. 2013 Dec 4;8(12):e82615. doi: 10.1371/journal.pone.0082615. eCollection 2013. PLoS One. 2013. PMID: 24324810 Free PMC article.

6

A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0.

Bazinet AL, Zwickl DJ, Cummings MP. Bazinet AL, et al. Syst Biol. 2014 Sep;63(5):812-8. doi: 10.1093/sysbio/syu031. Epub 2014 Apr 30. Syst Biol. 2014. PMID: 24789072 Free PMC article.

7

Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia).

Goodheart JA, Bazinet AL, Valdés Á, Collins AG, Cummings MP. Goodheart JA, et al. Among authors: bazinet al. BMC Evol Biol. 2017 Oct 26;17(1):221. doi: 10.1186/s12862-017-1066-0. BMC Evol Biol. 2017. PMID: 29073890 Free PMC article.

8

Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation.

Goodheart JA, Bazinet AL, Collins AG, Cummings MP. Goodheart JA, et al. Among authors: bazinet al. R Soc Open Sci. 2015 Sep 23;2(9):150196. doi: 10.1098/rsos.150196. eCollection 2015 Sep. R Soc Open Sci. 2015. PMID: 26473045 Free PMC article.

9

Pan-genome and phylogeny of Bacillus cereus sensu lato.

Bazinet AL. Bazinet AL. BMC Evol Biol. 2017 Aug 2;17(1):176. doi: 10.1186/s12862-017-1020-1. BMC Evol Biol. 2017. PMID: 28768476 Free PMC article.

10

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.

Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ. Meisel JS, et al. Among authors: bazinet al. Microbiome. 2018 Nov 5;6(1):197. doi: 10.1186/s40168-018-0582-5. Microbiome. 2018. PMID: 30396371 Free PMC article.

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