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The functional impact of rare variation across the regulatory cascade.
Cell Genom. 2023 Sep 6;3(10):100401. doi: 10.1016/j.xgen.2023.100401. eCollection 2023 Oct 11.
Cell Genom. 2023.
PMID: 37868038
Free PMC article.
Jasmine and Iris: population-scale structural variant comparison and analysis.
Kirsche M, Prabhu G, Sherman R, Ni B, Battle A, Aganezov S, Schatz MC.
Kirsche M, et al. Among authors: ni b.
Nat Methods. 2023 Mar;20(3):408-417. doi: 10.1038/s41592-022-01753-3. Epub 2023 Jan 19.
Nat Methods. 2023.
PMID: 36658279
Free PMC article.
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Benchmarking challenging small variants with linked and long reads.
Wagner J, Olson ND, Harris L, Khan Z, Farek J, Mahmoud M, Stankovic A, Kovacevic V, Yoo B, Miller N, Rosenfeld JA, Ni B, Zarate S, Kirsche M, Aganezov S, Schatz MC, Narzisi G, Byrska-Bishop M, Clarke W, Evani US, Markello C, Shafin K, Zhou X, Sidow A, Bansal V, Ebert P, Marschall T, Lansdorp P, Hanlon V, Mattsson CA, Barrio AM, Fiddes IT, Xiao C, Fungtammasan A, Chin CS, Wenger AM, Rowell WJ, Sedlazeck FJ, Carroll A, Salit M, Zook JM.
Wagner J, et al. Among authors: ni b.
Cell Genom. 2022 May;2(5):100128. doi: 10.1016/j.xgen.2022.100128.
Cell Genom. 2022.
PMID: 36452119
Free PMC article.
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Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED.
Kovaka S, Fan Y, Ni B, Timp W, Schatz MC.
Kovaka S, et al. Among authors: ni b.
Nat Biotechnol. 2021 Apr;39(4):431-441. doi: 10.1038/s41587-020-0731-9. Epub 2020 Nov 30.
Nat Biotechnol. 2021.
PMID: 33257863
Free PMC article.
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Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages.
Gauglitz JM, Aceves CM, Aksenov AA, Aleti G, Almaliti J, Bouslimani A, Brown EA, Campeau A, Caraballo-Rodríguez AM, Chaar R, da Silva RR, Demko AM, Di Ottavio F, Elijah E, Ernst M, Ferguson LP, Holmes X, Jarmusch AK, Jiang L, Kang KB, Koester I, Kwan B, Li J, Li Y, Melnik AV, Molina-Santiago C, Ni B, Oom AL, Panitchpakdi MW, Petras D, Quinn R, Sikora N, Spengler K, Teke B, Tripathi A, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vrbanac A, Vu AQ, Wang SC, Weldon K, Wilson K, Wozniak JM, Yoon M, Bandeira N, Dorrestein PC.
Gauglitz JM, et al. Among authors: ni b.
Food Chem. 2020 Jan 1;302:125290. doi: 10.1016/j.foodchem.2019.125290. Epub 2019 Jul 30.
Food Chem. 2020.
PMID: 31404873
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Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease.
Jensen TD, Ni B, Reuter CM, Gorzynski JE, Fazal S, Bonner D, Ungar RA, Goddard PC, Raja A, Ashley EA, Bernstein JA, Zuchner S; Undiagnosed Diseases Network; Greicius MD, Montgomery SB, Schatz MC, Wheeler MT, Battle A.
Jensen TD, et al. Among authors: ni b.
medRxiv [Preprint]. 2024 Mar 26:2024.03.22.24304565. doi: 10.1101/2024.03.22.24304565.
medRxiv. 2024.
PMID: 38585781
Free PMC article.
Preprint.
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