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Tackling soil diversity with the assembly of large, complex metagenomes.
Howe AC, Jansson JK, Malfatti SA, Tringe SG, Tiedje JM, Brown CT. Howe AC, et al. Among authors: brown ct. Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4904-9. doi: 10.1073/pnas.1402564111. Epub 2014 Mar 14. Proc Natl Acad Sci U S A. 2014. PMID: 24632729 Free PMC article.
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs.
Pell J, Hintze A, Canino-Koning R, Howe A, Tiedje JM, Brown CT. Pell J, et al. Among authors: brown ct. Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13272-7. doi: 10.1073/pnas.1121464109. Epub 2012 Jul 30. Proc Natl Acad Sci U S A. 2012. PMID: 22847406 Free PMC article.
FunGene: the functional gene pipeline and repository.
Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR. Fish JA, et al. Among authors: brown ct. Front Microbiol. 2013 Oct 1;4:291. doi: 10.3389/fmicb.2013.00291. eCollection 2013. Front Microbiol. 2013. PMID: 24101916 Free PMC article.
Ribosomal Database Project: data and tools for high throughput rRNA analysis.
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. Cole JR, et al. Among authors: brown ct. Nucleic Acids Res. 2014 Jan;42(Database issue):D633-42. doi: 10.1093/nar/gkt1244. Epub 2013 Nov 27. Nucleic Acids Res. 2014. PMID: 24288368 Free PMC article.
The khmer software package: enabling efficient nucleotide sequence analysis.
Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, González I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Härpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT. Crusoe MR, et al. Among authors: brown ct. F1000Res. 2015 Sep 25;4:900. doi: 10.12688/f1000research.6924.1. eCollection 2015. F1000Res. 2015. PMID: 26535114 Free PMC article.
The principles of tomorrow's university.
Katz DS, Allen G, Barba LA, Berg DR, Bik H, Boettiger C, Borgman CL, Brown CT, Buck S, Burd R, de Waard A, Eve MP, Granger BE, Greenberg J, Howe A, Howe B, Khanna M, Killeen TL, Mayernik M, McKiernan E, Mentzel C, Merchant N, Niemeyer KE, Noren L, Nusser SM, Reed DA, Seidel E, Smith M, Spies JR, Turk M, Van Horn JD, Walsh J. Katz DS, et al. Among authors: brown ct. F1000Res. 2018 Dec 11;7:1926. doi: 10.12688/f1000research.17425.1. eCollection 2018. F1000Res. 2018. PMID: 30687499 Free PMC article.
291 results