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U-Net: deep learning for cell counting, detection, and morphometry.
Falk T, Mai D, Bensch R, Çiçek Ö, Abdulkadir A, Marrakchi Y, Böhm A, Deubner J, Jäckel Z, Seiwald K, Dovzhenko A, Tietz O, Dal Bosco C, Walsh S, Saltukoglu D, Tay TL, Prinz M, Palme K, Simons M, Diester I, Brox T, Ronneberger O. Falk T, et al. Among authors: brox t. Nat Methods. 2019 Jan;16(1):67-70. doi: 10.1038/s41592-018-0261-2. Epub 2018 Dec 17. Nat Methods. 2019. PMID: 30559429
An objective comparison of cell-tracking algorithms.
Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C. Ulman V, et al. Among authors: brox t. Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30. Nat Methods. 2017. PMID: 29083403 Free PMC article.
Author Correction: U-Net: deep learning for cell counting, detection, and morphometry.
Falk T, Mai D, Bensch R, Çiçek Ö, Abdulkadir A, Marrakchi Y, Böhm A, Deubner J, Jäckel Z, Seiwald K, Dovzhenko A, Tietz O, Bosco CD, Walsh S, Saltukoglu D, Tay TL, Prinz M, Palme K, Simons M, Diester I, Brox T, Ronneberger O. Falk T, et al. Among authors: brox t. Nat Methods. 2019 Apr;16(4):351. doi: 10.1038/s41592-019-0356-4. Nat Methods. 2019. PMID: 30804552
Deep learning is widely applicable to phenotyping embryonic development and disease.
Naert T, Çiçek Ö, Ogar P, Bürgi M, Shaidani NI, Kaminski MM, Xu Y, Grand K, Vujanovic M, Prata D, Hildebrandt F, Brox T, Ronneberger O, Voigt FF, Helmchen F, Loffing J, Horb ME, Willsey HR, Lienkamp SS. Naert T, et al. Among authors: brox t. Development. 2021 Nov 1;148(21):dev199664. doi: 10.1242/dev.199664. Epub 2021 Nov 5. Development. 2021. PMID: 34739029 Free PMC article.
Microridge-like structures anchor motile cilia.
Yasunaga T, Wiegel J, Bergen MD, Helmstädter M, Epting D, Paolini A, Çiçek Ö, Radziwill G, Engel C, Brox T, Ronneberger O, Walentek P, Ulbrich MH, Walz G. Yasunaga T, et al. Among authors: brox t. Nat Commun. 2022 Apr 19;13(1):2056. doi: 10.1038/s41467-022-29741-3. Nat Commun. 2022. PMID: 35440631 Free PMC article.
3D pose estimation enables virtual head fixation in freely moving rats.
Schneider A, Zimmermann C, Alyahyay M, Steenbergen F, Brox T, Diester I. Schneider A, et al. Among authors: brox t. Neuron. 2022 Jul 6;110(13):2080-2093.e10. doi: 10.1016/j.neuron.2022.04.019. Epub 2022 May 23. Neuron. 2022. PMID: 35609615 Free article.
36 results