Bushel PR - Search Results

1

Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.

Williams-DeVane CR, Reif DM, Hubal EC, Bushel PR, Hudgens EE, Gallagher JE, Edwards SW. Williams-DeVane CR, et al. Among authors: bushel pr. BMC Syst Biol. 2013 Nov 4;7:119. doi: 10.1186/1752-0509-7-119. BMC Syst Biol. 2013. PMID: 24188919 Free PMC article.

2

Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.

Bushel PR, Wolfinger RD, Gibson G. Bushel PR, et al. BMC Syst Biol. 2007 Feb 23;1:15. doi: 10.1186/1752-0509-1-15. BMC Syst Biol. 2007. PMID: 17408499 Free PMC article.

3

Toward a checklist for exchange and interpretation of data from a toxicology study.

Fostel JM, Burgoon L, Zwickl C, Lord P, Corton JC, Bushel PR, Cunningham M, Fan L, Edwards SW, Hester S, Stevens J, Tong W, Waters M, Yang C, Tennant R. Fostel JM, et al. Among authors: bushel pr. Toxicol Sci. 2007 Sep;99(1):26-34. doi: 10.1093/toxsci/kfm090. Epub 2007 Apr 17. Toxicol Sci. 2007. PMID: 17442663

4

Clustering of gene expression data and end-point measurements by simulated annealing.

Bushel PR. Bushel PR. J Bioinform Comput Biol. 2009 Feb;7(1):193-215. doi: 10.1142/s021972000900400x. J Bioinform Comput Biol. 2009. PMID: 19226667 Free PMC article.

5

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle.

Bushel PR, Heard NA, Gutman R, Liu L, Peddada SD, Pyne S. Bushel PR, et al. BMC Syst Biol. 2009 Sep 16;3:93. doi: 10.1186/1752-0509-3-93. BMC Syst Biol. 2009. PMID: 19758441 Free PMC article.

6

EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data.

Li J, Bushel PR. Li J, et al. Among authors: bushel pr. BMC Genomics. 2016 Mar 22;17:255. doi: 10.1186/s12864-016-2584-7. BMC Genomics. 2016. PMID: 27004791 Free PMC article.

7

Discovery in toxicology: mediation by gene expression array technology.

Hamadeh HK, Bushel P, Paules R, Afshari CA. Hamadeh HK, et al. J Biochem Mol Toxicol. 2001;15(5):231-42. doi: 10.1002/jbt.10006. J Biochem Mol Toxicol. 2001. PMID: 11835620 Review.

8

Detection of diluted gene expression alterations using cDNA microarrays.

Hamadeh HK, Bushel P, Tucker CJ, Martin K, Paules R, Afshari CA. Hamadeh HK, et al. Biotechniques. 2002 Feb;32(2):322, 324, 326-9. Biotechniques. 2002. PMID: 11848409

9

Gene expression analysis reveals chemical-specific profiles.

Hamadeh HK, Bushel PR, Jayadev S, Martin K, DiSorbo O, Sieber S, Bennett L, Tennant R, Stoll R, Barrett JC, Blanchard K, Paules RS, Afshari CA. Hamadeh HK, et al. Among authors: bushel pr. Toxicol Sci. 2002 Jun;67(2):219-31. doi: 10.1093/toxsci/67.2.219. Toxicol Sci. 2002. PMID: 12011481

10

Prediction of compound signature using high density gene expression profiling.

Hamadeh HK, Bushel PR, Jayadev S, DiSorbo O, Bennett L, Li L, Tennant R, Stoll R, Barrett JC, Paules RS, Blanchard K, Afshari CA. Hamadeh HK, et al. Among authors: bushel pr. Toxicol Sci. 2002 Jun;67(2):232-40. doi: 10.1093/toxsci/67.2.232. Toxicol Sci. 2002. PMID: 12011482

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