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RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.
Tierrafría VH, Rioualen C, Salgado H, Lara P, Gama-Castro S, Lally P, Gómez-Romero L, Peña-Loredo P, López-Almazo AG, Alarcón-Carranza G, Betancourt-Figueroa F, Alquicira-Hernández S, Polanco-Morelos JE, García-Sotelo J, Gaytan-Nuñez E, Méndez-Cruz CF, Muñiz LJ, Bonavides-Martínez C, Moreno-Hagelsieb G, Galagan JE, Wade JT, Collado-Vides J. Tierrafría VH, et al. Among authors: mendez cruz cf. Microb Genom. 2022 May;8(5):mgen000833. doi: 10.1099/mgen.0.000833. Microb Genom. 2022. PMID: 35584008 Free PMC article.
Strategies towards digital and semi-automated curation in RegulonDB.
Rinaldi F, Lithgow O, Gama-Castro S, Solano H, Lopez A, Muñiz Rascado LJ, Ishida-Gutiérrez C, Méndez-Cruz CF, Collado-Vides J. Rinaldi F, et al. Among authors: mendez cruz cf. Database (Oxford). 2017 Jan 1;2017(1):bax012. doi: 10.1093/database/bax012. Database (Oxford). 2017. PMID: 28365731 Free PMC article.
Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria.
Díaz-Rodríguez M, Lithgow-Serrano O, Guadarrama-García F, Tierrafría VH, Gama-Castro S, Solano-Lira H, Salgado H, Rinaldi F, Méndez-Cruz CF, Collado-Vides J. Díaz-Rodríguez M, et al. Among authors: mendez cruz cf. Biochim Biophys Acta Gene Regul Mech. 2021 Nov-Dec;1864(11-12):194753. doi: 10.1016/j.bbagrm.2021.194753. Epub 2021 Aug 28. Biochim Biophys Acta Gene Regul Mech. 2021. PMID: 34461312 Free PMC article.
Strategies towards digital and semi-automated curation in RegulonDB.
Rinaldi F, Lithgow O, Gama-Castro S, Solano H, López-Fuentes A, Muñiz Rascado LJ, Ishida-Gutiérrez C, Méndez-Cruz CF, Collado-Vides J. Rinaldi F, et al. Among authors: mendez cruz cf. Database (Oxford). 2017 Jan 1;2017:bax012. doi: 10.1093/database/bax029. Database (Oxford). 2017. PMID: 28605767 Free PMC article. No abstract available.
RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12.
Santos-Zavaleta A, Salgado H, Gama-Castro S, Sánchez-Pérez M, Gómez-Romero L, Ledezma-Tejeida D, García-Sotelo JS, Alquicira-Hernández K, Muñiz-Rascado LJ, Peña-Loredo P, Ishida-Gutiérrez C, Velázquez-Ramírez DA, Del Moral-Chávez V, Bonavides-Martínez C, Méndez-Cruz CF, Galagan J, Collado-Vides J. Santos-Zavaleta A, et al. Among authors: mendez cruz cf. Nucleic Acids Res. 2019 Jan 8;47(D1):D212-D220. doi: 10.1093/nar/gky1077. Nucleic Acids Res. 2019. PMID: 30395280 Free PMC article.