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A genome-wide investigation of microRNA expression identifies biologically-meaningful microRNAs that distinguish between high-risk and low-risk intraductal papillary mucinous neoplasms of the pancreas.
Permuth-Wey J, Chen YA, Fisher K, McCarthy S, Qu X, Lloyd MC, Kasprzak A, Fournier M, Williams VL, Ghia KM, Yoder SJ, Hall L, Georgeades C, Olaoye F, Husain K, Springett GM, Chen DT, Yeatman T, Centeno BA, Klapman J, Coppola D, Malafa M. Permuth-Wey J, et al. Among authors: chen dt, chen ya. PLoS One. 2015 Jan 21;10(1):e0116869. doi: 10.1371/journal.pone.0116869. eCollection 2015. PLoS One. 2015. PMID: 25607660 Free PMC article.
SNP interaction pattern identifier (SIPI): an intensive search for SNP-SNP interaction patterns.
Lin HY, Chen DT, Huang PY, Liu YH, Ochoa A, Zabaleta J, Mercante DE, Fang Z, Sellers TA, Pow-Sang JM, Cheng CH, Eeles R, Easton D, Kote-Jarai Z, Amin Al Olama A, Benlloch S, Muir K, Giles GG, Wiklund F, Gronberg H, Haiman CA, Schleutker J, Nordestgaard BG, Travis RC, Hamdy F, Pashayan N, Khaw KT, Stanford JL, Blot WJ, Thibodeau SN, Maier C, Kibel AS, Cybulski C, Cannon-Albright L, Brenner H, Kaneva R, Batra J, Teixeira MR, Pandha H, Lu YJ; PRACTICAL Consortium; Park JY. Lin HY, et al. Among authors: chen dt. Bioinformatics. 2017 Mar 15;33(6):822-833. doi: 10.1093/bioinformatics/btw762. Bioinformatics. 2017. PMID: 28039167 Free PMC article.
AA9int: SNP interaction pattern search using non-hierarchical additive model set.
Lin HY, Huang PY, Chen DT, Tung HY, Sellers TA, Pow-Sang JM, Eeles R, Easton D, Kote-Jarai Z, Amin Al Olama A, Benlloch S, Muir K, Giles GG, Wiklund F, Gronberg H, Haiman CA, Schleutker J, Nordestgaard BG, Travis RC, Hamdy F, Neal DE, Pashayan N, Khaw KT, Stanford JL, Blot WJ, Thibodeau SN, Maier C, Kibel AS, Cybulski C, Cannon-Albright L, Brenner H, Kaneva R, Batra J, Teixeira MR, Pandha H, Lu YJ; PRACTICAL Consortium; Park JY. Lin HY, et al. Among authors: chen dt. Bioinformatics. 2018 Dec 15;34(24):4141-4150. doi: 10.1093/bioinformatics/bty461. Bioinformatics. 2018. PMID: 29878078 Free PMC article.
301 results