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Metabolic modeling with Big Data and the gut microbiome.
Sung J, Hale V, Merkel AC, Kim PJ, Chia N. Sung J, et al. Among authors: chia n. Appl Transl Genom. 2016 Feb 5;10:10-5. doi: 10.1016/j.atg.2016.02.001. eCollection 2016 Sep. Appl Transl Genom. 2016. PMID: 27668170 Free PMC article. Review.
Shifts in the Fecal Microbiota Associated with Adenomatous Polyps.
Hale VL, Chen J, Johnson S, Harrington SC, Yab TC, Smyrk TC, Nelson H, Boardman LA, Druliner BR, Levin TR, Rex DK, Ahnen DJ, Lance P, Ahlquist DA, Chia N. Hale VL, et al. Among authors: chia n. Cancer Epidemiol Biomarkers Prev. 2017 Jan;26(1):85-94. doi: 10.1158/1055-9965.EPI-16-0337. Epub 2016 Sep 26. Cancer Epidemiol Biomarkers Prev. 2017. PMID: 27672054 Free PMC article.
Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer.
Hale VL, Jeraldo P, Mundy M, Yao J, Keeney G, Scott N, Cheek EH, Davidson J, Greene M, Martinez C, Lehman J, Pettry C, Reed E, Lyke K, White BA, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Boardman L, Larson D, Nelson H, Chia N. Hale VL, et al. Among authors: chia n. Methods. 2018 Oct 1;149:59-68. doi: 10.1016/j.ymeth.2018.04.024. Epub 2018 Apr 26. Methods. 2018. PMID: 29704665 Free PMC article.
Clostridioides difficile uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea.
Battaglioli EJ, Hale VL, Chen J, Jeraldo P, Ruiz-Mojica C, Schmidt BA, Rekdal VM, Till LM, Huq L, Smits SA, Moor WJ, Jones-Hall Y, Smyrk T, Khanna S, Pardi DS, Grover M, Patel R, Chia N, Nelson H, Sonnenburg JL, Farrugia G, Kashyap PC. Battaglioli EJ, et al. Among authors: chia n. Sci Transl Med. 2018 Oct 24;10(464):eaam7019. doi: 10.1126/scitranslmed.aam7019. Sci Transl Med. 2018. PMID: 30355801 Free PMC article.
Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers.
Hale VL, Jeraldo P, Chen J, Mundy M, Yao J, Priya S, Keeney G, Lyke K, Ridlon J, White BA, French AJ, Thibodeau SN, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Sung J, Blekhman R, Boardman L, Larson D, Nelson H, Chia N. Hale VL, et al. Among authors: chia n. Genome Med. 2018 Oct 31;10(1):78. doi: 10.1186/s13073-018-0586-6. Genome Med. 2018. PMID: 30376889 Free PMC article.
262 results