High-content phenotypic screen to identify small molecule enhancers of Parkin-dependent ubiquitination and mitophagy

SLAS Discov. 2023 Apr;28(3):73-87. doi: 10.1016/j.slasd.2022.12.004. Epub 2023 Jan 4.

Abstract

Mitochondrial dysfunction and aberrant mitochondrial homeostasis are key aspects of Parkinson's disease (PD) pathophysiology. Mutations in PINK1 and Parkin proteins lead to autosomal recessive PD, suggesting that defective mitochondrial clearance via mitophagy is key in PD etiology. Accelerating the identification and/or removal of dysfunctional mitochondria could therefore provide a disease-modifying approach to treatment. To that end, we performed a high-content phenotypic screen (HCS) of ∼125,000 small molecules to identify compounds that positively modulate mitochondrial accumulation of the PINK1-Parkin-dependent mitophagy initiation marker p-Ser65-Ub in Parkin haploinsufficiency (Parkin +/R275W) human fibroblasts. Following confirmatory counter-screening and orthogonal assays, we selected compounds of interest that enhance mitophagy-related biochemical and functional endpoints in patient-derived fibroblasts. Identification of inhibitors of the ubiquitin-specific peptidase and negative regulator of mitophagy USP30 within our hits further validated our approach. The compounds identified in this work provide a novel starting point for further investigation and optimization.

Keywords: High-content screening; Mitophagy; PINK1; Parkin; Parkinson's disease; USP30.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Humans
  • Mitochondrial Proteins / genetics
  • Mitochondrial Proteins / metabolism
  • Mitophagy* / genetics
  • Mutation
  • Parkinson Disease* / drug therapy
  • Parkinson Disease* / genetics
  • Parkinson Disease* / metabolism
  • Protein Kinases / genetics
  • Protein Kinases / metabolism
  • Thiolester Hydrolases / genetics
  • Thiolester Hydrolases / metabolism
  • Ubiquitin-Protein Ligases / genetics
  • Ubiquitin-Protein Ligases / metabolism
  • Ubiquitination / genetics

Substances

  • Protein Kinases
  • Ubiquitin-Protein Ligases
  • Usp30 protein, human
  • Thiolester Hydrolases
  • Mitochondrial Proteins