Cirillo D - Search Results

1

Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein.

Zanzoni A, Marchese D, Agostini F, Bolognesi B, Cirillo D, Botta-Orfila M, Livi CM, Rodriguez-Mulero S, Tartaglia GG. Zanzoni A, et al. Among authors: cirillo d. Nucleic Acids Res. 2013 Dec;41(22):9987-98. doi: 10.1093/nar/gkt794. Epub 2013 Sep 3. Nucleic Acids Res. 2013. PMID: 24003031 Free PMC article.

2

Characterization of novel paternal ncRNAs at the Plagl1 locus, including Hymai, predicted to interact with regulators of active chromatin.

Iglesias-Platas I, Martin-Trujillo A, Cirillo D, Court F, Guillaumet-Adkins A, Camprubi C, Bourc'his D, Hata K, Feil R, Tartaglia G, Arnaud P, Monk D. Iglesias-Platas I, et al. Among authors: cirillo d. PLoS One. 2012;7(6):e38907. doi: 10.1371/journal.pone.0038907. Epub 2012 Jun 19. PLoS One. 2012. PMID: 22723905 Free PMC article.

3

X-inactivation: quantitative predictions of protein interactions in the Xist network.

Agostini F, Cirillo D, Bolognesi B, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. Nucleic Acids Res. 2013 Jan 7;41(1):e31. doi: 10.1093/nar/gks968. Epub 2012 Oct 22. Nucleic Acids Res. 2013. PMID: 23093590 Free PMC article.

4

Neurodegenerative diseases: quantitative predictions of protein-RNA interactions.

Cirillo D, Agostini F, Klus P, Marchese D, Rodriguez S, Bolognesi B, Tartaglia GG. Cirillo D, et al. RNA. 2013 Feb;19(2):129-40. doi: 10.1261/rna.034777.112. Epub 2012 Dec 21. RNA. 2013. PMID: 23264567 Free PMC article.

5

catRAPID omics: a web server for large-scale prediction of protein-RNA interactions.

Agostini F, Zanzoni A, Klus P, Marchese D, Cirillo D, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. Bioinformatics. 2013 Nov 15;29(22):2928-30. doi: 10.1093/bioinformatics/btt495. Epub 2013 Aug 23. Bioinformatics. 2013. PMID: 23975767 Free PMC article.

6

Constitutive patterns of gene expression regulated by RNA-binding proteins.

Cirillo D, Marchese D, Agostini F, Livi CM, Botta-Orfila T, Tartaglia GG. Cirillo D, et al. Genome Biol. 2014 Jan 2;15(1):R13. doi: 10.1186/gb-2014-15-1-r13. Genome Biol. 2014. PMID: 24401680 Free PMC article.

7

Discovery of protein-RNA networks.

Cirillo D, Livi CM, Agostini F, Tartaglia GG. Cirillo D, et al. Mol Biosyst. 2014 Jul;10(7):1632-42. doi: 10.1039/c4mb00099d. Epub 2014 Apr 23. Mol Biosyst. 2014. PMID: 24756571 Review.

8

ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli.

Agostini F, Cirillo D, Livi CM, Delli Ponti R, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. Bioinformatics. 2014 Oct 15;30(20):2975-7. doi: 10.1093/bioinformatics/btu420. Epub 2014 Jul 1. Bioinformatics. 2014. PMID: 24990610 Free PMC article.

9

SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences.

Agostini F, Cirillo D, Ponti RD, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. BMC Genomics. 2014 Oct 23;15(1):925. doi: 10.1186/1471-2164-15-925. BMC Genomics. 2014. PMID: 25341390 Free PMC article.

10

By the company they keep: interaction networks define the binding ability of transcription factors.

Cirillo D, Botta-Orfila T, Tartaglia GG. Cirillo D, et al. Nucleic Acids Res. 2015 Oct 30;43(19):e125. doi: 10.1093/nar/gkv607. Epub 2015 Jun 18. Nucleic Acids Res. 2015. PMID: 26089389 Free PMC article.

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