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Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments.
Kapushesky M, Adamusiak T, Burdett T, Culhane A, Farne A, Filippov A, Holloway E, Klebanov A, Kryvych N, Kurbatova N, Kurnosov P, Malone J, Melnichuk O, Petryszak R, Pultsin N, Rustici G, Tikhonov A, Travillian RS, Williams E, Zorin A, Parkinson H, Brazma A. Kapushesky M, et al. Among authors: culhane a. Nucleic Acids Res. 2012 Jan;40(Database issue):D1077-81. doi: 10.1093/nar/gkr913. Epub 2011 Nov 7. Nucleic Acids Res. 2012. PMID: 22064864 Free PMC article.
GeneSigDB--a curated database of gene expression signatures.
Culhane AC, Schwarzl T, Sultana R, Picard KC, Picard SC, Lu TH, Franklin KR, French SJ, Papenhausen G, Correll M, Quackenbush J. Culhane AC, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D716-25. doi: 10.1093/nar/gkp1015. Epub 2009 Nov 24. Nucleic Acids Res. 2010. PMID: 19934259 Free PMC article.
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.
Culhane AC, Schröder MS, Sultana R, Picard SC, Martinelli EN, Kelly C, Haibe-Kains B, Kapushesky M, St Pierre AA, Flahive W, Picard KC, Gusenleitner D, Papenhausen G, O'Connor N, Correll M, Quackenbush J. Culhane AC, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D1060-6. doi: 10.1093/nar/gkr901. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110038 Free PMC article.
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.
Ho Sui SJ, Begley K, Reilly D, Chapman B, McGovern R, Rocca-Sera P, Maguire E, Altschuler GM, Hansen TA, Sompallae R, Krivtsov A, Shivdasani RA, Armstrong SA, Culhane AC, Correll M, Sansone SA, Hofmann O, Hide W. Ho Sui SJ, et al. Among authors: culhane ac. Nucleic Acids Res. 2012 Jan;40(Database issue):D984-91. doi: 10.1093/nar/gkr1051. Epub 2011 Nov 24. Nucleic Acids Res. 2012. PMID: 22121217 Free PMC article.
iBBiG: iterative binary bi-clustering of gene sets.
Gusenleitner D, Howe EA, Bentink S, Quackenbush J, Culhane AC. Gusenleitner D, et al. Among authors: culhane ac. Bioinformatics. 2012 Oct 1;28(19):2484-92. doi: 10.1093/bioinformatics/bts438. Epub 2012 Jul 12. Bioinformatics. 2012. PMID: 22789589 Free PMC article.
105 results