D'haeseleer P - Search Results

1

Estimating and improving protein interaction error rates.

D'haeseleer P, Church GM. D'haeseleer P, et al. Proc IEEE Comput Syst Bioinform Conf. 2004:216-23. doi: 10.1109/csb.2004.1332435. Proc IEEE Comput Syst Bioinform Conf. 2004. PMID: 16448015

2

Automated modelling of signal transduction networks.

Steffen M, Petti A, Aach J, D'haeseleer P, Church G. Steffen M, et al. BMC Bioinformatics. 2002 Nov 1;3:34. doi: 10.1186/1471-2105-3-34. BMC Bioinformatics. 2002. PMID: 12413400 Free PMC article.

3

From annotated genomes to metabolic flux models and kinetic parameter fitting.

Segrè D, Zucker J, Katz J, Lin X, D'haeseleer P, Rindone WP, Kharchenko P, Nguyen DH, Wright MA, Church GM. Segrè D, et al. OMICS. 2003 Fall;7(3):301-16. doi: 10.1089/153623103322452413. OMICS. 2003. PMID: 14583118

4

Deciphering principles of transcription regulation in eukaryotic genomes.

Nguyen DH, D'haeseleer P. Nguyen DH, et al. Mol Syst Biol. 2006;2:2006.0012. doi: 10.1038/msb4100054. Epub 2006 Apr 18. Mol Syst Biol. 2006. PMID: 16738557 Free PMC article.

5

Genetic network inference: from co-expression clustering to reverse engineering.

D'haeseleer P, Liang S, Somogyi R. D'haeseleer P, et al. Bioinformatics. 2000 Aug;16(8):707-26. doi: 10.1093/bioinformatics/16.8.707. Bioinformatics. 2000. PMID: 11099257

6

Linear modeling of mRNA expression levels during CNS development and injury.

D'haeseleer P, Wen X, Fuhrman S, Somogyi R. D'haeseleer P, et al. Pac Symp Biocomput. 1999:41-52. doi: 10.1142/9789814447300_0005. Pac Symp Biocomput. 1999. PMID: 10380184 Free article.

7

Microbial genotype-phenotype mapping by class association rule mining.

Tamura M, D'haeseleer P. Tamura M, et al. Bioinformatics. 2008 Jul 1;24(13):1523-9. doi: 10.1093/bioinformatics/btn210. Epub 2008 May 8. Bioinformatics. 2008. PMID: 18467347 Free PMC article.

8

How does gene expression clustering work?

D'haeseleer P. D'haeseleer P. Nat Biotechnol. 2005 Dec;23(12):1499-501. doi: 10.1038/nbt1205-1499. Nat Biotechnol. 2005. PMID: 16333293 Review.

9

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.

Seaver SMD, Liu F, Zhang Q, Jeffryes J, Faria JP, Edirisinghe JN, Mundy M, Chia N, Noor E, Beber ME, Best AA, DeJongh M, Kimbrel JA, D'haeseleer P, McCorkle SR, Bolton JR, Pearson E, Canon S, Wood-Charlson EM, Cottingham RW, Arkin AP, Henry CS. Seaver SMD, et al. Among authors: d haeseleer p. Nucleic Acids Res. 2021 Jan 8;49(D1):D575-D588. doi: 10.1093/nar/gkaa746. Nucleic Acids Res. 2021. PMID: 32986834 Free PMC article.

10

How does DNA sequence motif discovery work?

D'haeseleer P. D'haeseleer P. Nat Biotechnol. 2006 Aug;24(8):959-61. doi: 10.1038/nbt0806-959. Nat Biotechnol. 2006. PMID: 16900144 Review. No abstract available.

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