Das R - Search Results

1

Quantitative comparison of villin headpiece subdomain simulations and triplet-triplet energy transfer experiments.

Beauchamp KA, Ensign DL, Das R, Pande VS. Beauchamp KA, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12734-9. doi: 10.1073/pnas.1010880108. Epub 2011 Jul 18. Proc Natl Acad Sci U S A. 2011. PMID: 21768345 Free PMC article.

2

Probing counterion modulated repulsion and attraction between nucleic acid duplexes in solution.

Bai Y, Das R, Millett IS, Herschlag D, Doniach S. Bai Y, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2005 Jan 25;102(4):1035-40. doi: 10.1073/pnas.0404448102. Epub 2005 Jan 12. Proc Natl Acad Sci U S A. 2005. PMID: 15647360 Free PMC article.

3

Structural inference of native and partially folded RNA by high-throughput contact mapping.

Das R, Kudaravalli M, Jonikas M, Laederach A, Fong R, Schwans JP, Baker D, Piccirilli JA, Altman RB, Herschlag D. Das R, et al. Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4144-9. doi: 10.1073/pnas.0709032105. Epub 2008 Mar 5. Proc Natl Acad Sci U S A. 2008. PMID: 18322008 Free PMC article.

4

Simultaneous prediction of protein folding and docking at high resolution.

Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D. Das R, et al. Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):18978-83. doi: 10.1073/pnas.0904407106. Epub 2009 Oct 28. Proc Natl Acad Sci U S A. 2009. PMID: 19864631 Free PMC article.

5

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sripakdeevong P, Kladwang W, Das R. Sripakdeevong P, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20573-8. doi: 10.1073/pnas.1106516108. Epub 2011 Dec 5. Proc Natl Acad Sci U S A. 2011. PMID: 22143768 Free PMC article.

6

Are Protein Force Fields Getting Better? A Systematic Benchmark on 524 Diverse NMR Measurements.

Beauchamp KA, Lin YS, Das R, Pande VS. Beauchamp KA, et al. Among authors: das r. J Chem Theory Comput. 2012 Apr 10;8(4):1409-1414. doi: 10.1021/ct2007814. Epub 2012 Mar 12. J Chem Theory Comput. 2012. PMID: 22754404 Free PMC article.

7

Bayesian energy landscape tilting: towards concordant models of molecular ensembles.

Beauchamp KA, Pande VS, Das R. Beauchamp KA, et al. Among authors: das r. Biophys J. 2014 Mar 18;106(6):1381-90. doi: 10.1016/j.bpj.2014.02.009. Biophys J. 2014. PMID: 24655513 Free PMC article.

8

Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Lipfert J, Skinner GM, Keegstra JM, Hensgens T, Jager T, Dulin D, Köber M, Yu Z, Donkers SP, Chou FC, Das R, Dekker NH. Lipfert J, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15408-13. doi: 10.1073/pnas.1407197111. Epub 2014 Oct 13. Proc Natl Acad Sci U S A. 2014. PMID: 25313077 Free PMC article.

9

Blind tests of RNA nearest-neighbor energy prediction.

Chou FC, Kladwang W, Kappel K, Das R. Chou FC, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8430-5. doi: 10.1073/pnas.1523335113. Epub 2016 Jul 8. Proc Natl Acad Sci U S A. 2016. PMID: 27402765 Free PMC article.

10

RNA structure inference through chemical mapping after accidental or intentional mutations.

Cheng CY, Kladwang W, Yesselman JD, Das R. Cheng CY, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9876-9881. doi: 10.1073/pnas.1619897114. Epub 2017 Aug 29. Proc Natl Acad Sci U S A. 2017. PMID: 28851837 Free PMC article.

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