Das R - Search Results

1

Geometric deep learning of RNA structure.

Townshend RJL, Eismann S, Watkins AM, Rangan R, Karelina M, Das R, Dror RO. Townshend RJL, et al. Among authors: das r. Science. 2021 Aug 27;373(6558):1047-1051. doi: 10.1126/science.abe5650. Science. 2021. PMID: 34446608 Free PMC article.

2

Remeasuring the double helix.

Mathew-Fenn RS, Das R, Harbury PA. Mathew-Fenn RS, et al. Among authors: das r. Science. 2008 Oct 17;322(5900):446-9. doi: 10.1126/science.1158881. Science. 2008. PMID: 18927394 Free PMC article.

3

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters.

Jonikas MA, Radmer RJ, Laederach A, Das R, Pearlman S, Herschlag D, Altman RB. Jonikas MA, et al. Among authors: das r. RNA. 2009 Feb;15(2):189-99. doi: 10.1261/rna.1270809. RNA. 2009. PMID: 19144906 Free PMC article.

4

Atomic accuracy in predicting and designing noncanonical RNA structure.

Das R, Karanicolas J, Baker D. Das R, et al. Nat Methods. 2010 Apr;7(4):291-4. doi: 10.1038/nmeth.1433. Epub 2010 Feb 28. Nat Methods. 2010. PMID: 20190761 Free PMC article.

5

A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA.

Kladwang W, Cordero P, Das R. Kladwang W, et al. Among authors: das r. RNA. 2011 Mar;17(3):522-34. doi: 10.1261/rna.2516311. Epub 2011 Jan 14. RNA. 2011. PMID: 21239468 Free PMC article.

6

Understanding the errors of SHAPE-directed RNA structure modeling.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Among authors: das r. Biochemistry. 2011 Sep 20;50(37):8049-56. doi: 10.1021/bi200524n. Epub 2011 Aug 25. Biochemistry. 2011. PMID: 21842868 Free PMC article.

7

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Among authors: das r. Nat Chem. 2011 Oct 30;3(12):954-62. doi: 10.1038/nchem.1176. Nat Chem. 2011. PMID: 22109276 Free PMC article.

8

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sripakdeevong P, Kladwang W, Das R. Sripakdeevong P, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20573-8. doi: 10.1073/pnas.1106516108. Epub 2011 Dec 5. Proc Natl Acad Sci U S A. 2011. PMID: 22143768 Free PMC article.

9

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E. Cruz JA, et al. Among authors: das r. RNA. 2012 Apr;18(4):610-25. doi: 10.1261/rna.031054.111. Epub 2012 Feb 23. RNA. 2012. PMID: 22361291 Free PMC article.

10

An RNA Mapping DataBase for curating RNA structure mapping experiments.

Cordero P, Lucks JB, Das R. Cordero P, et al. Among authors: das r. Bioinformatics. 2012 Nov 15;28(22):3006-8. doi: 10.1093/bioinformatics/bts554. Epub 2012 Sep 12. Bioinformatics. 2012. PMID: 22976082 Free PMC article.

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