DeWitt WS - Search Results

1

Exact and efficient phylodynamic simulation from arbitrarily large populations.

Celentano M, DeWitt WS, Prillo S, Song YS. Celentano M, et al. Among authors: dewitt ws. ArXiv [Preprint]. 2024 Feb 27:arXiv:2402.17153v1. ArXiv. 2024. PMID: 38463501 Free PMC article. Preprint.

2

Representing and extending ensembles of parsimonious evolutionary histories with a directed acyclic graph.

Dumm W, Barker M, Howard-Snyder W, DeWitt WS, Iv FAM. Dumm W, et al. Among authors: dewitt ws. ArXiv [Preprint]. 2023 Oct 11:arXiv:2310.07919v1. ArXiv. 2023. PMID: 37873002 Free PMC article. Updated. Preprint.

3

Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs.

Haddox HK, Galloway JG, Dadonaite B, Bloom JD, Matsen Iv FA, DeWitt WS. Haddox HK, et al. Among authors: dewitt ws. bioRxiv [Preprint]. 2023 Aug 2:2023.07.31.551037. doi: 10.1101/2023.07.31.551037. bioRxiv. 2023. PMID: 37577604 Free PMC article. Preprint.

4

Increased mutation and gene conversion within human segmental duplications.

Vollger MR, Dishuck PC, Harvey WT, DeWitt WS, Guitart X, Goldberg ME, Rozanski AN, Lucas J, Asri M; Human Pangenome Reference Consortium; Munson KM, Lewis AP, Hoekzema K, Logsdon GA, Porubsky D, Paten B, Harris K, Hsieh P, Eichler EE. Vollger MR, et al. Among authors: dewitt ws. Nature. 2023 May;617(7960):325-334. doi: 10.1038/s41586-023-05895-y. Epub 2023 May 10. Nature. 2023. PMID: 37165237 Free PMC article.

5

A biophysical model of viral escape from polyclonal antibodies.

Yu TC, Thornton ZT, Hannon WW, DeWitt WS, Radford CE, Matsen FA 4th, Bloom JD. Yu TC, et al. Among authors: dewitt ws. Virus Evol. 2022 Dec 12;8(2):veac110. doi: 10.1093/ve/veac110. eCollection 2022. Virus Evol. 2022. PMID: 36582502 Free PMC article.

6

Robustness of Phylogenetic Inference to Model Misspecification Caused by Pairwise Epistasis.

Magee AF, Hilton SK, DeWitt WS. Magee AF, et al. Among authors: dewitt ws. Mol Biol Evol. 2021 Sep 27;38(10):4603-4615. doi: 10.1093/molbev/msab163. Mol Biol Evol. 2021. PMID: 34043795 Free PMC article.

7

Nonparametric coalescent inference of mutation spectrum history and demography.

DeWitt WS, Harris KD, Ragsdale AP, Harris K. DeWitt WS, et al. Proc Natl Acad Sci U S A. 2021 May 25;118(21):e2013798118. doi: 10.1073/pnas.2013798118. Proc Natl Acad Sci U S A. 2021. PMID: 34016747 Free PMC article.

8

Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19.

Montague Z, Lv H, Otwinowski J, DeWitt WS, Isacchini G, Yip GK, Ng WW, Tsang OT, Yuan M, Liu H, Wilson IA, Peiris JSM, Wu NC, Nourmohammad A, Mok CKP. Montague Z, et al. Among authors: dewitt ws. Cell Rep. 2021 May 25;35(8):109173. doi: 10.1016/j.celrep.2021.109173. Epub 2021 May 9. Cell Rep. 2021. PMID: 33991510 Free PMC article.

9

ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS.

Feng J, Dewitt WS 3rd, McKenna A, Simon N, Willis AD, Matsen FA 4th. Feng J, et al. Among authors: dewitt ws 3rd. Ann Appl Stat. 2021 Mar;15(1):343-362. doi: 10.1214/20-aoas1400. Epub 2021 Mar 18. Ann Appl Stat. 2021. PMID: 35990087 Free PMC article.

10

Dynamics of B-cell repertoires and emergence of cross-reactive responses in COVID-19 patients with different disease severity.

Montague Z, Lv H, Otwinowski J, DeWitt WS, Isacchini G, Yip GK, Ng WW, Tsang OT, Yuan M, Liu H, Wilson IA, Peiris JSM, Wu NC, Nourmohammad A, Mok CKP. Montague Z, et al. Among authors: dewitt ws. medRxiv [Preprint]. 2021 Apr 5:2020.07.13.20153114. doi: 10.1101/2020.07.13.20153114. medRxiv. 2021. PMID: 32699862 Free PMC article. Updated. Preprint.

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