Dojer N - Search Results

1

Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing.

Crosetto N, Mitra A, Silva MJ, Bienko M, Dojer N, Wang Q, Karaca E, Chiarle R, Skrzypczak M, Ginalski K, Pasero P, Rowicka M, Dikic I. Crosetto N, et al. Among authors: dojer n. Nat Methods. 2013 Apr;10(4):361-5. doi: 10.1038/nmeth.2408. Epub 2013 Mar 17. Nat Methods. 2013. PMID: 23503052 Free PMC article.

2

qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing.

Zhu Y, Biernacka A, Pardo B, Dojer N, Forey R, Skrzypczak M, Fongang B, Nde J, Yousefi R, Pasero P, Ginalski K, Rowicka M. Zhu Y, et al. Among authors: dojer n. Nat Commun. 2019 May 24;10(1):2313. doi: 10.1038/s41467-019-10332-8. Nat Commun. 2019. PMID: 31127121 Free PMC article.

3

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.

Clouaire T, Rocher V, Lashgari A, Arnould C, Aguirrebengoa M, Biernacka A, Skrzypczak M, Aymard F, Fongang B, Dojer N, Iacovoni JS, Rowicka M, Ginalski K, Côté J, Legube G. Clouaire T, et al. Among authors: dojer n. Mol Cell. 2018 Oct 18;72(2):250-262.e6. doi: 10.1016/j.molcel.2018.08.020. Epub 2018 Sep 27. Mol Cell. 2018. PMID: 30270107 Free PMC article.

4

Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress.

Shi W, Vu T, Boucher D, Biernacka A, Nde J, Pandita RK, Straube J, Boyle GM, Al-Ejeh F, Nag P, Jeffery J, Harris JL, Bain AL, Grzelak M, Skrzypczak M, Mitra A, Dojer N, Crosetto N, Cloonan N, Becherel OJ, Finnie J, Skaar JR, Walkley CR, Pandita TK, Rowicka M, Ginalski K, Lane SW, Khanna KK. Shi W, et al. Among authors: dojer n. Blood. 2017 May 4;129(18):2479-2492. doi: 10.1182/blood-2016-06-725093. Epub 2017 Mar 7. Blood. 2017. PMID: 28270450 Free PMC article.

5

A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq.

Yang J, Mitra A, Dojer N, Fu S, Rowicka M, Brasier AR. Yang J, et al. Among authors: dojer n. Nucleic Acids Res. 2013 Aug;41(15):7240-59. doi: 10.1093/nar/gkt493. Epub 2013 Jun 14. Nucleic Acids Res. 2013. PMID: 23771139 Free PMC article.

6

Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data.

Dabrowski M, Dojer N, Krystkowiak I, Kaminska B, Wilczynski B. Dabrowski M, et al. Among authors: dojer n. BMC Bioinformatics. 2015 May 1;16:140. doi: 10.1186/s12859-015-0573-5. BMC Bioinformatics. 2015. PMID: 25927199 Free PMC article.

7

Bi-billboard: symmetrization and careful choice of informant species results in higher accuracy of regulatory element prediction.

Dojer N, Biecek P, Tiuryn J. Dojer N, et al. J Comput Biol. 2011 Jun;18(6):809-19. doi: 10.1089/cmb.2010.0299. Epub 2011 May 12. J Comput Biol. 2011. PMID: 21563976

8

BNFinder2: Faster Bayesian network learning and Bayesian classification.

Dojer N, Bednarz P, Podsiadlo A, Wilczynski B. Dojer N, et al. Bioinformatics. 2013 Aug 15;29(16):2068-70. doi: 10.1093/bioinformatics/btt323. Epub 2013 Jul 1. Bioinformatics. 2013. PMID: 23818512 Free PMC article.

9

Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs.

Wilczynski B, Dojer N, Patelak M, Tiuryn J. Wilczynski B, et al. Among authors: dojer n. BMC Bioinformatics. 2009 Mar 10;10:82. doi: 10.1186/1471-2105-10-82. BMC Bioinformatics. 2009. PMID: 19284541 Free PMC article.

10

Linearization of genome sequence graphs revisited.

Lisiecka A, Dojer N. Lisiecka A, et al. Among authors: dojer n. iScience. 2021 Jun 19;24(7):102755. doi: 10.1016/j.isci.2021.102755. eCollection 2021 Jul 23. iScience. 2021. PMID: 34278263 Free PMC article.

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