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Table representation of search results timeline featuring number of search results per year.
Year | Number of Results |
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2020 | 1 |
2021 | 1 |
2023 | 2 |
2024 | 1 |
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Author-sourced capture of pathway knowledge in computable form using Biofactoid.
Elife. 2021 Dec 3;10:e68292. doi: 10.7554/eLife.68292.
Elife. 2021.
PMID: 34860157
Free PMC article.
Cytoscape.js 2023 update: a graph theory library for visualization and analysis.
Franz M, Lopes CT, Fong D, Kucera M, Cheung M, Siper MC, Huck G, Dong Y, Sumer O, Bader GD.
Franz M, et al. Among authors: fong d.
Bioinformatics. 2023 Jan 1;39(1):btad031. doi: 10.1093/bioinformatics/btad031.
Bioinformatics. 2023.
PMID: 36645249
Free PMC article.
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NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange.
Pillich RT, Chen J, Churas C, Fong D, Gyori BM, Ideker T, Karis K, Liu SN, Ono K, Pico A, Pratt D.
Pillich RT, et al. Among authors: fong d.
Bioinformatics. 2023 Mar 1;39(3):btad118. doi: 10.1093/bioinformatics/btad118.
Bioinformatics. 2023.
PMID: 36882166
Free PMC article.
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Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.
Rodchenkov I, Babur O, Luna A, Aksoy BA, Wong JV, Fong D, Franz M, Siper MC, Cheung M, Wrana M, Mistry H, Mosier L, Dlin J, Wen Q, O'Callaghan C, Li W, Elder G, Smith PT, Dallago C, Cerami E, Gross B, Dogrusoz U, Demir E, Bader GD, Sander C.
Rodchenkov I, et al. Among authors: fong d.
Nucleic Acids Res. 2020 Jan 8;48(D1):D489-D497. doi: 10.1093/nar/gkz946.
Nucleic Acids Res. 2020.
PMID: 31647099
Free PMC article.
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Evaluation of large language models for discovery of gene set function.
Hu M, Alkhairy S, Lee I, Pillich RT, Fong D, Smith K, Bachelder R, Ideker T, Pratt D.
Hu M, et al. Among authors: fong d.
ArXiv [Preprint]. 2024 Apr 1:arXiv:2309.04019v2.
ArXiv. 2024.
PMID: 37731657
Free PMC article.
Preprint.
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