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2023 | 3 |
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Page 1
Standardized annotation of translated open reading frames.
Nat Biotechnol. 2022 Jul;40(7):994-999. doi: 10.1038/s41587-022-01369-0.
Nat Biotechnol. 2022.
PMID: 35831657
Free PMC article.
No abstract available.
GENCODE: reference annotation for the human and mouse genomes in 2023.
Frankish A, Carbonell-Sala S, Diekhans M, Jungreis I, Loveland JE, Mudge JM, Sisu C, Wright JC, Arnan C, Barnes I, Banerjee A, Bennett R, Berry A, Bignell A, Boix C, Calvet F, Cerdán-Vélez D, Cunningham F, Davidson C, Donaldson S, Dursun C, Fatima R, Giorgetti S, Giron CG, Gonzalez JM, Hardy M, Harrison PW, Hourlier T, Hollis Z, Hunt T, James B, Jiang Y, Johnson R, Kay M, Lagarde J, Martin FJ, Gómez LM, Nair S, Ni P, Pozo F, Ramalingam V, Ruffier M, Schmitt BM, Schreiber JM, Steed E, Suner MM, Sumathipala D, Sycheva I, Uszczynska-Ratajczak B, Wass E, Yang YT, Yates A, Zafrulla Z, Choudhary JS, Gerstein M, Guigo R, Hubbard TJP, Kellis M, Kundaje A, Paten B, Tress ML, Flicek P.
Frankish A, et al. Among authors: calvet f.
Nucleic Acids Res. 2023 Jan 6;51(D1):D942-D949. doi: 10.1093/nar/gkac1071.
Nucleic Acids Res. 2023.
PMID: 36420896
Free PMC article.
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Genes enriched in A/T-ending codons are co-regulated and conserved across mammals.
Benisty H, Hernandez-Alias X, Weber M, Anglada-Girotto M, Mantica F, Radusky L, Senger G, Calvet F, Weghorn D, Irimia M, Schaefer MH, Serrano L.
Benisty H, et al. Among authors: calvet f.
Cell Syst. 2023 Apr 19;14(4):312-323.e3. doi: 10.1016/j.cels.2023.02.002. Epub 2023 Mar 7.
Cell Syst. 2023.
PMID: 36889307
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The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome.
Chaturvedi A, Li X, Dhandapani V, Marshall H, Kissane S, Cuenca-Cambronero M, Asole G, Calvet F, Ruiz-Romero M, Marangio P, Guigó R, Rago D, Mirbahai L, Eastwood N, Colbourne JK, Zhou J, Mallon E, Orsini L.
Chaturvedi A, et al. Among authors: calvet f.
Nucleic Acids Res. 2023 Oct 13;51(18):9785-9803. doi: 10.1093/nar/gkad685.
Nucleic Acids Res. 2023.
PMID: 37638757
Free PMC article.
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