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Whole-Genome Sequencing Analysis from the Chikungunya Virus Caribbean Outbreak Reveals Novel Evolutionary Genomic Elements.
Stapleford KA, Moratorio G, Henningsson R, Chen R, Matheus S, Enfissi A, Weissglas-Volkov D, Isakov O, Blanc H, Mounce BC, Dupont-Rouzeyrol M, Shomron N, Weaver S, Fontes M, Rousset D, Vignuzzi M. Stapleford KA, et al. Among authors: fontes m. PLoS Negl Trop Dis. 2016 Jan 25;10(1):e0004402. doi: 10.1371/journal.pntd.0004402. eCollection 2016 Jan. PLoS Negl Trop Dis. 2016. PMID: 26807575 Free PMC article.
Group Selection and Contribution of Minority Variants during Virus Adaptation Determines Virus Fitness and Phenotype.
Bordería AV, Isakov O, Moratorio G, Henningsson R, Agüera-González S, Organtini L, Gnädig NF, Blanc H, Alcover A, Hafenstein S, Fontes M, Shomron N, Vignuzzi M. Bordería AV, et al. Among authors: fontes m. PLoS Pathog. 2015 May 5;11(5):e1004838. doi: 10.1371/journal.ppat.1004838. eCollection 2015 May. PLoS Pathog. 2015. PMID: 25941809 Free PMC article.
Attenuation of RNA viruses by redirecting their evolution in sequence space.
Moratorio G, Henningsson R, Barbezange C, Carrau L, Bordería AV, Blanc H, Beaucourt S, Poirier EZ, Vallet T, Boussier J, Mounce BC, Fontes M, Vignuzzi M. Moratorio G, et al. Among authors: fontes m. Nat Microbiol. 2017 Jun 5;2(8):17088. doi: 10.1038/nmicrobiol.2017.88. Nat Microbiol. 2017. PMID: 28581455 Free PMC article.
DISSEQT-DIStribution-based modeling of SEQuence space Time dynamics.
Henningsson R, Moratorio G, Bordería AV, Vignuzzi M, Fontes M. Henningsson R, et al. Among authors: fontes m. Virus Evol. 2019 Aug 5;5(2):vez028. doi: 10.1093/ve/vez028. eCollection 2019 Jul. Virus Evol. 2019. PMID: 31392032 Free PMC article.
SMSSVD: SubMatrix Selection Singular Value Decomposition.
Henningsson R, Fontes M. Henningsson R, et al. Among authors: fontes m. Bioinformatics. 2019 Feb 1;35(3):478-486. doi: 10.1093/bioinformatics/bty566. Bioinformatics. 2019. PMID: 30010791 Free PMC article.
Identification of ETV6-RUNX1-like and DUX4-rearranged subtypes in paediatric B-cell precursor acute lymphoblastic leukaemia.
Lilljebjörn H, Henningsson R, Hyrenius-Wittsten A, Olsson L, Orsmark-Pietras C, von Palffy S, Askmyr M, Rissler M, Schrappe M, Cario G, Castor A, Pronk CJ, Behrendtz M, Mitelman F, Johansson B, Paulsson K, Andersson AK, Fontes M, Fioretos T. Lilljebjörn H, et al. Among authors: fontes m. Nat Commun. 2016 Jun 6;7:11790. doi: 10.1038/ncomms11790. Nat Commun. 2016. PMID: 27265895 Free PMC article.
The ABCs of viral hepatitis that define biomarker signatures of acute viral hepatitis.
Duffy D, Mamdouh R, Laird M, Soneson C, Le Fouler L, El-Daly M, Casrouge A, Decalf J, Abbas A, Eldin NS, Fontes M, Abdel-Hamid M, Mohamed MK, Rafik M, Fontanet A, Albert ML. Duffy D, et al. Among authors: fontes m. Hepatology. 2014 Apr;59(4):1273-82. doi: 10.1002/hep.26901. Epub 2014 Feb 18. Hepatology. 2014. PMID: 24500966
663 results