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Analysis of Bacterial Transcription by "Massively Systematic Transcript End Readout," MASTER.
Methods Enzymol. 2018;612:269-302. doi: 10.1016/bs.mie.2018.09.007. Epub 2018 Oct 12.
Methods Enzymol. 2018.
PMID: 30502946
Free PMC article.
The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA.
Bird JG, Zhang Y, Tian Y, Panova N, Barvík I, Greene L, Liu M, Buckley B, Krásný L, Lee JK, Kaplan CD, Ebright RH, Nickels BE.
Bird JG, et al.
Nature. 2016 Jul 21;535(7612):444-7. doi: 10.1038/nature18622. Epub 2016 Jul 6.
Nature. 2016.
PMID: 27383794
Free PMC article.
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Interactions between RNA polymerase and the core recognition element are a determinant of transcription start site selection.
Vvedenskaya IO, Vahedian-Movahed H, Zhang Y, Taylor DM, Ebright RH, Nickels BE.
Vvedenskaya IO, et al.
Proc Natl Acad Sci U S A. 2016 May 24;113(21):E2899-905. doi: 10.1073/pnas.1603271113. Epub 2016 May 9.
Proc Natl Acad Sci U S A. 2016.
PMID: 27162333
Free PMC article.
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Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection.
Winkelman JT, Vvedenskaya IO, Zhang Y, Zhang Y, Bird JG, Taylor DM, Gourse RL, Ebright RH, Nickels BE.
Winkelman JT, et al.
Science. 2016 Mar 4;351(6277):1090-3. doi: 10.1126/science.aad6881.
Science. 2016.
PMID: 26941320
Free PMC article.
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Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields.
Vvedenskaya IO, Zhang Y, Goldman SR, Valenti A, Visone V, Taylor DM, Ebright RH, Nickels BE.
Vvedenskaya IO, et al.
Mol Cell. 2015 Dec 17;60(6):953-65. doi: 10.1016/j.molcel.2015.10.029. Epub 2015 Nov 25.
Mol Cell. 2015.
PMID: 26626484
Free PMC article.
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