Garfield D - Search Results

1

Genetic variants regulating expression levels and isoform diversity during embryogenesis.

Cannavò E, Koelling N, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E, Furlong EE. Cannavò E, et al. Among authors: garfield d. Nature. 2017 Jan 19;541(7637):402-406. doi: 10.1038/nature20802. Epub 2016 Dec 26. Nature. 2017. PMID: 28024300

2

The cis-regulatory dynamics of embryonic development at single-cell resolution.

Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. Cusanovich DA, et al. Among authors: garfield da. Nature. 2018 Mar 22;555(7697):538-542. doi: 10.1038/nature25981. Epub 2018 Mar 14. Nature. 2018. PMID: 29539636 Free PMC article.

3

Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis.

Reddington JP, Garfield DA, Sigalova OM, Karabacak Calviello A, Marco-Ferreres R, Girardot C, Viales RR, Degner JF, Ohler U, Furlong EEM. Reddington JP, et al. Among authors: garfield da. Dev Cell. 2020 Dec 7;55(5):648-664.e9. doi: 10.1016/j.devcel.2020.10.009. Epub 2020 Nov 9. Dev Cell. 2020. PMID: 33171098 Free article.

4

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.

Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE. Cannavò E, et al. Curr Biol. 2016 Jan 11;26(1):38-51. doi: 10.1016/j.cub.2015.11.034. Epub 2015 Dec 10. Curr Biol. 2016. PMID: 26687625 Free PMC article.

5

Promoter shape varies across populations and affects promoter evolution and expression noise.

Schor IE, Degner JF, Harnett D, Cannavò E, Casale FP, Shim H, Garfield DA, Birney E, Stephens M, Stegle O, Furlong EE. Schor IE, et al. Among authors: garfield da. Nat Genet. 2017 Apr;49(4):550-558. doi: 10.1038/ng.3791. Epub 2017 Feb 13. Nat Genet. 2017. PMID: 28191888

6

The Role of Chromatin Accessibility in cis-Regulatory Evolution.

Peng PC, Khoueiry P, Girardot C, Reddington JP, Garfield DA, Furlong EEM, Sinha S. Peng PC, et al. Among authors: garfield da. Genome Biol Evol. 2019 Jul 1;11(7):1813-1828. doi: 10.1093/gbe/evz103. Genome Biol Evol. 2019. PMID: 31114856 Free PMC article.

7

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing.

Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO. Zichner T, et al. Genome Res. 2013 Mar;23(3):568-79. doi: 10.1101/gr.142646.112. Epub 2012 Dec 6. Genome Res. 2013. PMID: 23222910 Free PMC article.

8

Cis-acting variation is common across regulatory layers but is often buffered during embryonic development.

Floc'hlay S, Wong ES, Zhao B, Viales RR, Thomas-Chollier M, Thieffry D, Garfield DA, Furlong EEM. Floc'hlay S, et al. Among authors: garfield da. Genome Res. 2021 Feb;31(2):211-224. doi: 10.1101/gr.266338.120. Epub 2020 Dec 11. Genome Res. 2021. PMID: 33310749 Free PMC article.

9

Ultrasensitive proteome analysis using paramagnetic bead technology.

Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Hughes CS, et al. Mol Syst Biol. 2014 Oct 30;10(10):757. doi: 10.15252/msb.20145625. Mol Syst Biol. 2014. PMID: 25358341 Free PMC article.

10

Next-generation sequencing-based detection of germline L1-mediated transductions.

Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO. Tica J, et al. BMC Genomics. 2016 May 10;17:342. doi: 10.1186/s12864-016-2670-x. BMC Genomics. 2016. PMID: 27161561 Free PMC article.

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