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The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services.
Avesani P, McPherson B, Hayashi S, Caiafa CF, Henschel R, Garyfallidis E, Kitchell L, Bullock D, Patterson A, Olivetti E, Sporns O, Saykin AJ, Wang L, Dinov I, Hancock D, Caron B, Qian Y, Pestilli F. Avesani P, et al. Among authors: garyfallidis e. Sci Data. 2019 May 23;6(1):69. doi: 10.1038/s41597-019-0073-y. Sci Data. 2019. PMID: 31123325 Free PMC article.
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?
Schilling KG, Rheault F, Petit L, Hansen CB, Nath V, Yeh FC, Girard G, Barakovic M, Rafael-Patino J, Yu T, Fischi-Gomez E, Pizzolato M, Ocampo-Pineda M, Schiavi S, Canales-Rodríguez EJ, Daducci A, Granziera C, Innocenti G, Thiran JP, Mancini L, Wastling S, Cocozza S, Petracca M, Pontillo G, Mancini M, Vos SB, Vakharia VN, Duncan JS, Melero H, Manzanedo L, Sanz-Morales E, Peña-Melián Á, Calamante F, Attyé A, Cabeen RP, Korobova L, Toga AW, Vijayakumari AA, Parker D, Verma R, Radwan A, Sunaert S, Emsell L, De Luca A, Leemans A, Bajada CJ, Haroon H, Azadbakht H, Chamberland M, Genc S, Tax CMW, Yeh PH, Srikanchana R, Mcknight CD, Yang JY, Chen J, Kelly CE, Yeh CH, Cochereau J, Maller JJ, Welton T, Almairac F, Seunarine KK, Clark CA, Zhang F, Makris N, Golby A, Rathi Y, O'Donnell LJ, Xia Y, Aydogan DB, Shi Y, Fernandes FG, Raemaekers M, Warrington S, Michielse S, Ramírez-Manzanares A, Concha L, Aranda R, Meraz MR, Lerma-Usabiaga G, Roitman L, Fekonja LS, Calarco N, Joseph M, Nakua H, Voineskos AN, Karan P, Grenier G, Legarreta JH, Adluru N, Nair VA, Prabhakaran V, Alexander AL, Kamagata K, Saito Y, Uchida W, Andica C, Abe M, Bayrak RG, Wheeler-Kingshott CAMG, D'Angelo E, Palesi F, Savi… See abstract for full author list ➔ Schilling KG, et al. Among authors: garyfallidis e. Neuroimage. 2021 Nov;243:118502. doi: 10.1016/j.neuroimage.2021.118502. Epub 2021 Aug 22. Neuroimage. 2021. PMID: 34433094 Free PMC article.
Learning white matter subject-specific segmentation from structural MRI.
Yang Q, Hansen CB, Cai LY, Rheault F, Lee HH, Bao S, Chandio BQ, Williams O, Resnick SM, Garyfallidis E, Anderson AW, Descoteaux M, Schilling KG, Landman BA. Yang Q, et al. Among authors: garyfallidis e. Med Phys. 2022 Apr;49(4):2502-2513. doi: 10.1002/mp.15495. Epub 2022 Feb 7. Med Phys. 2022. PMID: 35090192 Free PMC article.
Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography.
Hansen CB, Yang Q, Lyu I, Rheault F, Kerley C, Chandio BQ, Fadnavis S, Williams O, Shafer AT, Resnick SM, Zald DH, Cutting LE, Taylor WD, Boyd B, Garyfallidis E, Anderson AW, Descoteaux M, Landman BA, Schilling KG. Hansen CB, et al. Among authors: garyfallidis e. Neuroinformatics. 2021 Jul;19(3):447-460. doi: 10.1007/s12021-020-09497-1. Epub 2020 Nov 16. Neuroinformatics. 2021. PMID: 33196967 Free PMC article.
What's new and what's next in diffusion MRI preprocessing.
Tax CMW, Bastiani M, Veraart J, Garyfallidis E, Okan Irfanoglu M. Tax CMW, et al. Among authors: garyfallidis e. Neuroimage. 2022 Apr 1;249:118830. doi: 10.1016/j.neuroimage.2021.118830. Epub 2021 Dec 26. Neuroimage. 2022. PMID: 34965454 Free PMC article. Review.
The challenge of mapping the human connectome based on diffusion tractography.
Maier-Hein KH, Neher PF, Houde JC, Côté MA, Garyfallidis E, Zhong J, Chamberland M, Yeh FC, Lin YC, Ji Q, Reddick WE, Glass JO, Chen DQ, Feng Y, Gao C, Wu Y, Ma J, He R, Li Q, Westin CF, Deslauriers-Gauthier S, González JOO, Paquette M, St-Jean S, Girard G, Rheault F, Sidhu J, Tax CMW, Guo F, Mesri HY, Dávid S, Froeling M, Heemskerk AM, Leemans A, Boré A, Pinsard B, Bedetti C, Desrosiers M, Brambati S, Doyon J, Sarica A, Vasta R, Cerasa A, Quattrone A, Yeatman J, Khan AR, Hodges W, Alexander S, Romascano D, Barakovic M, Auría A, Esteban O, Lemkaddem A, Thiran JP, Cetingul HE, Odry BL, Mailhe B, Nadar MS, Pizzagalli F, Prasad G, Villalon-Reina JE, Galvis J, Thompson PM, Requejo FS, Laguna PL, Lacerda LM, Barrett R, Dell'Acqua F, Catani M, Petit L, Caruyer E, Daducci A, Dyrby TB, Holland-Letz T, Hilgetag CC, Stieltjes B, Descoteaux M. Maier-Hein KH, et al. Among authors: garyfallidis e. Nat Commun. 2017 Nov 7;8(1):1349. doi: 10.1038/s41467-017-01285-x. Nat Commun. 2017. PMID: 29116093 Free PMC article.
QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data.
Cieslak M, Cook PA, He X, Yeh FC, Dhollander T, Adebimpe A, Aguirre GK, Bassett DS, Betzel RF, Bourque J, Cabral LM, Davatzikos C, Detre JA, Earl E, Elliott MA, Fadnavis S, Fair DA, Foran W, Fotiadis P, Garyfallidis E, Giesbrecht B, Gur RC, Gur RE, Kelz MB, Keshavan A, Larsen BS, Luna B, Mackey AP, Milham MP, Oathes DJ, Perrone A, Pines AR, Roalf DR, Richie-Halford A, Rokem A, Sydnor VJ, Tapera TM, Tooley UA, Vettel JM, Yeatman JD, Grafton ST, Satterthwaite TD. Cieslak M, et al. Among authors: garyfallidis e. Nat Methods. 2021 Jul;18(7):775-778. doi: 10.1038/s41592-021-01185-5. Epub 2021 Jun 21. Nat Methods. 2021. PMID: 34155395 Free PMC article.
MASiVar: Multisite, multiscanner, and multisubject acquisitions for studying variability in diffusion weighted MRI.
Cai LY, Yang Q, Kanakaraj P, Nath V, Newton AT, Edmonson HA, Luci J, Conrad BN, Price GR, Hansen CB, Kerley CI, Ramadass K, Yeh FC, Kang H, Garyfallidis E, Descoteaux M, Rheault F, Schilling KG, Landman BA. Cai LY, et al. Among authors: garyfallidis e. Magn Reson Med. 2021 Dec;86(6):3304-3320. doi: 10.1002/mrm.28926. Epub 2021 Jul 16. Magn Reson Med. 2021. PMID: 34270123 Free PMC article.
39 results