Gifford DK - Search Results

1

Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons.

Lodato S, Molyneaux BJ, Zuccaro E, Goff LA, Chen HH, Yuan W, Meleski A, Takahashi E, Mahony S, Rinn JL, Gifford DK, Arlotta P. Lodato S, et al. Among authors: gifford dk. Nat Neurosci. 2014 Aug;17(8):1046-54. doi: 10.1038/nn.3757. Epub 2014 Jul 6. Nat Neurosci. 2014. PMID: 24997765 Free PMC article.

2

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Bar-Joseph Z, et al. Among authors: gifford dk. Nat Biotechnol. 2003 Nov;21(11):1337-42. doi: 10.1038/nbt890. Epub 2003 Oct 12. Nat Biotechnol. 2003. PMID: 14555958 Free article.

3

Feed-forward regulation of a cell fate determinant by an RNA-binding protein generates asymmetry in yeast.

Wolf JJ, Dowell RD, Mahony S, Rabani M, Gifford DK, Fink GR. Wolf JJ, et al. Among authors: gifford dk. Genetics. 2010 Jun;185(2):513-22. doi: 10.1534/genetics.110.113944. Epub 2010 Apr 9. Genetics. 2010. PMID: 20382833 Free PMC article.

4

Global control of motor neuron topography mediated by the repressive actions of a single hox gene.

Jung H, Lacombe J, Mazzoni EO, Liem KF Jr, Grinstein J, Mahony S, Mukhopadhyay D, Gifford DK, Young RA, Anderson KV, Wichterle H, Dasen JS. Jung H, et al. Among authors: gifford dk. Neuron. 2010 Sep 9;67(5):781-96. doi: 10.1016/j.neuron.2010.08.008. Neuron. 2010. PMID: 20826310 Free PMC article.

5

Discovering homotypic binding events at high spatial resolution.

Guo Y, Papachristoudis G, Altshuler RC, Gerber GK, Jaakkola TS, Gifford DK, Mahony S. Guo Y, et al. Among authors: gifford dk. Bioinformatics. 2010 Dec 15;26(24):3028-34. doi: 10.1093/bioinformatics/btq590. Epub 2010 Oct 21. Bioinformatics. 2010. PMID: 20966006 Free PMC article.

6

Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis.

Mahony S, Mazzoni EO, McCuine S, Young RA, Wichterle H, Gifford DK. Mahony S, et al. Among authors: gifford dk. Genome Biol. 2011;12(1):R2. doi: 10.1186/gb-2011-12-1-r2. Epub 2011 Jan 13. Genome Biol. 2011. PMID: 21232103 Free PMC article.

7

Embryonic stem cell-based mapping of developmental transcriptional programs.

Mazzoni EO, Mahony S, Iacovino M, Morrison CA, Mountoufaris G, Closser M, Whyte WA, Young RA, Kyba M, Gifford DK, Wichterle H. Mazzoni EO, et al. Among authors: gifford dk. Nat Methods. 2011 Nov 13;8(12):1056-8. doi: 10.1038/nmeth.1775. Nat Methods. 2011. PMID: 22081127 Free PMC article.

8

High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints.

Guo Y, Mahony S, Gifford DK. Guo Y, et al. Among authors: gifford dk. PLoS Comput Biol. 2012;8(8):e1002638. doi: 10.1371/journal.pcbi.1002638. Epub 2012 Aug 9. PLoS Comput Biol. 2012. PMID: 22912568 Free PMC article.

9

A multi-parametric flow cytometric assay to analyze DNA-protein interactions.

Arbab M, Mahony S, Cho H, Chick JM, Rolfe PA, van Hoff JP, Morris VW, Gygi SP, Maas RL, Gifford DK, Sherwood RI. Arbab M, et al. Among authors: gifford dk. Nucleic Acids Res. 2013 Jan;41(2):e38. doi: 10.1093/nar/gks1034. Epub 2012 Nov 11. Nucleic Acids Res. 2013. PMID: 23143268 Free PMC article.

10

Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity.

Mazzoni EO, Mahony S, Closser M, Morrison CA, Nedelec S, Williams DJ, An D, Gifford DK, Wichterle H. Mazzoni EO, et al. Among authors: gifford dk. Nat Neurosci. 2013 Sep;16(9):1219-27. doi: 10.1038/nn.3467. Epub 2013 Jul 21. Nat Neurosci. 2013. PMID: 23872598 Free PMC article.

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