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MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions.
Baran Y, Bercovich A, Sebe-Pedros A, Lubling Y, Giladi A, Chomsky E, Meir Z, Hoichman M, Lifshitz A, Tanay A. Baran Y, et al. Among authors: giladi a. Genome Biol. 2019 Oct 11;20(1):206. doi: 10.1186/s13059-019-1812-2. Genome Biol. 2019. PMID: 31604482 Free PMC article.
Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors.
Paul F, Arkin Y, Giladi A, Jaitin DA, Kenigsberg E, Keren-Shaul H, Winter D, Lara-Astiaso D, Gury M, Weiner A, David E, Cohen N, Lauridsen FK, Haas S, Schlitzer A, Mildner A, Ginhoux F, Jung S, Trumpp A, Porse BT, Tanay A, Amit I. Paul F, et al. Among authors: giladi a. Cell. 2015 Dec 17;163(7):1663-77. doi: 10.1016/j.cell.2015.11.013. Epub 2015 Nov 25. Cell. 2015. PMID: 26627738 Free article.
The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome.
Gury-BenAri M, Thaiss CA, Serafini N, Winter DR, Giladi A, Lara-Astiaso D, Levy M, Salame TM, Weiner A, David E, Shapiro H, Dori-Bachash M, Pevsner-Fischer M, Lorenzo-Vivas E, Keren-Shaul H, Paul F, Harmelin A, Eberl G, Itzkovitz S, Tanay A, Di Santo JP, Elinav E, Amit I. Gury-BenAri M, et al. Among authors: giladi a. Cell. 2016 Aug 25;166(5):1231-1246.e13. doi: 10.1016/j.cell.2016.07.043. Epub 2016 Aug 18. Cell. 2016. PMID: 27545347 Free article.
Dissecting cellular crosstalk by sequencing physically interacting cells.
Giladi A, Cohen M, Medaglia C, Baran Y, Li B, Zada M, Bost P, Blecher-Gonen R, Salame TM, Mayer JU, David E, Ronchese F, Tanay A, Amit I. Giladi A, et al. Nat Biotechnol. 2020 May;38(5):629-637. doi: 10.1038/s41587-020-0442-2. Epub 2020 Mar 9. Nat Biotechnol. 2020. PMID: 32152598
The interaction of CD4+ helper T cells with dendritic cells shapes the tumor microenvironment and immune checkpoint blockade response.
Cohen M, Giladi A, Barboy O, Hamon P, Li B, Zada M, Gurevich-Shapiro A, Beccaria CG, David E, Maier BB, Buckup M, Kamer I, Deczkowska A, Le Berichel J, Bar J, Iannacone M, Tanay A, Merad M, Amit I. Cohen M, et al. Among authors: giladi a. Nat Cancer. 2022 Mar;3(3):303-317. doi: 10.1038/s43018-022-00338-5. Epub 2022 Mar 3. Nat Cancer. 2022. PMID: 35241835
Single-cell spatial reconstruction reveals global division of labour in the mammalian liver.
Halpern KB, Shenhav R, Matcovitch-Natan O, Toth B, Lemze D, Golan M, Massasa EE, Baydatch S, Landen S, Moor AE, Brandis A, Giladi A, Avihail AS, David E, Amit I, Itzkovitz S. Halpern KB, et al. Among authors: giladi a. Nature. 2017 Feb 16;542(7641):352-356. doi: 10.1038/nature21065. Epub 2017 Feb 6. Nature. 2017. PMID: 28166538 Free PMC article.
Immunology, one cell at a time.
Giladi A, Amit I. Giladi A, et al. Nature. 2017 Jul 3;547(7661):27-29. doi: 10.1038/547027a. Nature. 2017. PMID: 28682352 No abstract available.
180 results