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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V. Overbeek R, et al. Among authors: glass em. Nucleic Acids Res. 2005 Oct 7;33(17):5691-702. doi: 10.1093/nar/gki866. Print 2005. Nucleic Acids Res. 2005. PMID: 16214803 Free PMC article.
The RAST Server: rapid annotations using subsystems technology.
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. Aziz RK, et al. Among authors: glass em. BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75. BMC Genomics. 2008. PMID: 18261238 Free PMC article.
Connecting genotype to phenotype in the era of high-throughput sequencing.
Henry CS, Overbeek R, Xia F, Best AA, Glass E, Gilbert J, Larsen P, Edwards R, Disz T, Meyer F, Vonstein V, Dejongh M, Bartels D, Desai N, D'Souza M, Devoid S, Keegan KP, Olson R, Wilke A, Wilkening J, Stevens RL. Henry CS, et al. Biochim Biophys Acta. 2011 Oct;1810(10):967-77. doi: 10.1016/j.bbagen.2011.03.010. Epub 2011 Mar 21. Biochim Biophys Acta. 2011. PMID: 21421023 Review.
From genomics to metagenomics.
Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F. Desai N, et al. Among authors: glass em. Curr Opin Biotechnol. 2012 Feb;23(1):72-6. doi: 10.1016/j.copbio.2011.12.017. Epub 2012 Jan 5. Curr Opin Biotechnol. 2012. PMID: 22227326 Review.
The MG-RAST metagenomics database and portal in 2015.
Wilke A, Bischof J, Gerlach W, Glass E, Harrison T, Keegan KP, Paczian T, Trimble WL, Bagchi S, Grama A, Chaterji S, Meyer F. Wilke A, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D590-4. doi: 10.1093/nar/gkv1322. Epub 2015 Dec 9. Nucleic Acids Res. 2016. PMID: 26656948 Free PMC article.
41 results