Goeman JJ - Search Results

1

Literature-aided interpretation of gene expression data with the weighted global test.

Jelier R, Goeman JJ, Hettne KM, Schuemie MJ, den Dunnen JT, 't Hoen PA. Jelier R, et al. Among authors: goeman jj. Brief Bioinform. 2011 Sep;12(5):518-29. doi: 10.1093/bib/bbq082. Epub 2010 Dec 22. Brief Bioinform. 2011. PMID: 21183478 Review.

2

Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods.

Ebrahimpoor M, Spitali P, Hettne K, Tsonaka R, Goeman J. Ebrahimpoor M, et al. Brief Bioinform. 2020 Jul 15;21(4):1302-1312. doi: 10.1093/bib/bbz074. Brief Bioinform. 2020. PMID: 31297505 Free PMC article. Review.

3

Common disease signatures from gene expression analysis in Huntington's disease human blood and brain.

Mina E, van Roon-Mom W, Hettne K, van Zwet E, Goeman J, Neri C, A C 't Hoen P, Mons B, Roos M. Mina E, et al. Orphanet J Rare Dis. 2016 Aug 1;11(1):97. doi: 10.1186/s13023-016-0475-2. Orphanet J Rare Dis. 2016. PMID: 27476530 Free PMC article.

4

Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data.

Hettne KM, Boorsma A, van Dartel DA, Goeman JJ, de Jong E, Piersma AH, Stierum RH, Kleinjans JC, Kors JA. Hettne KM, et al. Among authors: goeman jj. BMC Med Genomics. 2013 Jan 29;6:2. doi: 10.1186/1755-8794-6-2. BMC Med Genomics. 2013. PMID: 23356878 Free PMC article.

5

Huntington's disease biomarker progression profile identified by transcriptome sequencing in peripheral blood.

Mastrokolias A, Ariyurek Y, Goeman JJ, van Duijn E, Roos RA, van der Mast RC, van Ommen GB, den Dunnen JT, 't Hoen PA, van Roon-Mom WM. Mastrokolias A, et al. Among authors: goeman jj. Eur J Hum Genet. 2015 Oct;23(10):1349-56. doi: 10.1038/ejhg.2014.281. Epub 2015 Jan 28. Eur J Hum Genet. 2015. PMID: 25626709 Free PMC article.

6

Assessing the translational landscape of myogenic differentiation by ribosome profiling.

de Klerk E, Fokkema IF, Thiadens KA, Goeman JJ, Palmblad M, den Dunnen JT, von Lindern M, 't Hoen PA. de Klerk E, et al. Among authors: goeman jj. Nucleic Acids Res. 2015 May 19;43(9):4408-28. doi: 10.1093/nar/gkv281. Epub 2015 Apr 14. Nucleic Acids Res. 2015. PMID: 25873627 Free PMC article.

7

Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model.

Toonen LJA, Overzier M, Evers MM, Leon LG, van der Zeeuw SAJ, Mei H, Kielbasa SM, Goeman JJ, Hettne KM, Magnusson OT, Poirel M, Seyer A, 't Hoen PAC, van Roon-Mom WMC. Toonen LJA, et al. Among authors: goeman jj. Mol Neurodegener. 2018 Jun 22;13(1):31. doi: 10.1186/s13024-018-0261-9. Mol Neurodegener. 2018. PMID: 29929540 Free PMC article.

8

Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation.

de Klerk E, Venema A, Anvar SY, Goeman JJ, Hu O, Trollet C, Dickson G, den Dunnen JT, van der Maarel SM, Raz V, 't Hoen PA. de Klerk E, et al. Among authors: goeman jj. Nucleic Acids Res. 2012 Oct;40(18):9089-101. doi: 10.1093/nar/gks655. Epub 2012 Jul 6. Nucleic Acids Res. 2012. PMID: 22772983 Free PMC article.

9

Deep sequencing to reveal new variants in pooled DNA samples.

Out AA, van Minderhout IJ, Goeman JJ, Ariyurek Y, Ossowski S, Schneeberger K, Weigel D, van Galen M, Taschner PE, Tops CM, Breuning MH, van Ommen GJ, den Dunnen JT, Devilee P, Hes FJ. Out AA, et al. Among authors: goeman jj. Hum Mutat. 2009 Dec;30(12):1703-12. doi: 10.1002/humu.21122. Hum Mutat. 2009. PMID: 19842214

10

A decline in PABPN1 induces progressive muscle weakness in oculopharyngeal muscle dystrophy and in muscle aging.

Anvar SY, Raz Y, Verway N, van der Sluijs B, Venema A, Goeman JJ, Vissing J, van der Maarel SM, 't Hoen PA, van Engelen BG, Raz V. Anvar SY, et al. Among authors: goeman jj. Aging (Albany NY). 2013 Jun;5(6):412-26. doi: 10.18632/aging.100567. Aging (Albany NY). 2013. PMID: 23793615 Free PMC article.

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