Golden A - Search Results

1

Gene-set analysis is severely biased when applied to genome-wide methylation data.

Geeleher P, Hartnett L, Egan LJ, Golden A, Raja Ali RA, Seoighe C. Geeleher P, et al. Among authors: golden a. Bioinformatics. 2013 Aug 1;29(15):1851-7. doi: 10.1093/bioinformatics/btt311. Epub 2013 Jun 3. Bioinformatics. 2013. PMID: 23732277

2

BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server.

Geeleher P, Morris D, Hinde JP, Golden A. Geeleher P, et al. Among authors: golden a. Bioinformatics. 2009 Jun 1;25(11):1438-9. doi: 10.1093/bioinformatics/btp165. Epub 2009 Mar 23. Bioinformatics. 2009. PMID: 19307241

3

Inflammation-associated DNA methylation patterns in epithelium of ulcerative colitis.

Barnicle A, Seoighe C, Greally JM, Golden A, Egan LJ. Barnicle A, et al. Among authors: golden a. Epigenetics. 2017 Aug;12(8):591-606. doi: 10.1080/15592294.2017.1334023. Epub 2017 May 30. Epigenetics. 2017. PMID: 28557546 Free PMC article.

4

Differential DNA methylation patterns of homeobox genes in proximal and distal colon epithelial cells.

Barnicle A, Seoighe C, Golden A, Greally JM, Egan LJ. Barnicle A, et al. Among authors: golden a. Physiol Genomics. 2016 Apr;48(4):257-73. doi: 10.1152/physiolgenomics.00046.2015. Epub 2016 Jan 26. Physiol Genomics. 2016. PMID: 26812987 Free PMC article.

5

The regulatory effect of miRNAs is a heritable genetic trait in humans.

Geeleher P, Huang SR, Gamazon ER, Golden A, Seoighe C. Geeleher P, et al. Among authors: golden a. BMC Genomics. 2012 Aug 10;13:383. doi: 10.1186/1471-2164-13-383. BMC Genomics. 2012. PMID: 23272639 Free PMC article.

6

RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.

Nadel J, Athanasiadou R, Lemetre C, Wijetunga NA, Ó Broin P, Sato H, Zhang Z, Jeddeloh J, Montagna C, Golden A, Seoighe C, Greally JM. Nadel J, et al. Among authors: golden a. Epigenetics Chromatin. 2015 Nov 16;8:46. doi: 10.1186/s13072-015-0040-6. eCollection 2015. Epigenetics Chromatin. 2015. PMID: 26579211 Free PMC article.

7

CG dinucleotide clustering is a species-specific property of the genome.

Glass JL, Thompson RF, Khulan B, Figueroa ME, Olivier EN, Oakley EJ, Van Zant G, Bouhassira EE, Melnick A, Golden A, Fazzari MJ, Greally JM. Glass JL, et al. Among authors: golden a. Nucleic Acids Res. 2007;35(20):6798-807. doi: 10.1093/nar/gkm489. Epub 2007 Oct 10. Nucleic Acids Res. 2007. PMID: 17932072 Free PMC article.

8

An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1.

Kim MK, McGarry TJ, O Broin P, Flatow JM, Golden AA, Licht JD. Kim MK, et al. Among authors: golden aa. Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11154-9. doi: 10.1073/pnas.0901591106. Epub 2009 Jun 22. Proc Natl Acad Sci U S A. 2009. PMID: 19549856 Free PMC article.

9

Transcription factor binding site identification using the self-organizing map.

Mahony S, Hendrix D, Golden A, Smith TJ, Rokhsar DS. Mahony S, et al. Among authors: golden a. Bioinformatics. 2005 May 1;21(9):1807-14. doi: 10.1093/bioinformatics/bti256. Epub 2005 Jan 12. Bioinformatics. 2005. PMID: 15647296

10

AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX.

Shieh KR, Kratschmer C, Maier KE, Greally JM, Levy M, Golden A. Shieh KR, et al. Among authors: golden a. Bioinformatics. 2020 May 1;36(9):2905-2906. doi: 10.1093/bioinformatics/btaa054. Bioinformatics. 2020. PMID: 31999328 Free PMC article.

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